Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00221 ATGCAGAGATTTGGGATTGTTGATATAATACGATCAATTCATCCTTCAACAGCCTCCCTCACGAAGTCTCTCTCGCCTCCCTTCTCACGCAAACCACGGCCACCAGGTCAGACGTTCGCCGGACGCCACTCGCCACCGTCGACCGCCCAGCCGTGCGCGTGCCGCCCACCATTCGTTCGCAAATTCGGGATTTACAAAATGAAGAACTTGTTTTTTTCGACCCTAATTCTTCAATCGCGATACGAGAGCCCCAAGCTTTTTCTGTACCATCAATGGCGAGGAATAGCGAAGGTTCGTCTCAAATGGGTTAAGAATCGAAGTCTCGATCACATCATCGACACGGAGACTGATTTGAAGGCCGCTTGCCTCCTTAAGGACGCCATTAAGCGCTCCTCTACTGGCTTCATCACCGCCAAATCCATCGCCGATTGGCAAAAGCTGCTCGGCCTCACCATCCCTGTTATTCGATTCATCCGGAGGTACCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCACTGTTTTTAGATCAGCAAGAGAGTAATATACACCAAATTCACGAGAACGACACTGTCGAAAGACTTTGTAGAGTGCTTATGATGATGAAAACTAGGGCTATTCCTCTTCAATCCTTGCGTCCCTTAGAATGGGATCTTGGTCTACCATGTGGTTTTGAGAGGTCATTGATTCCTAGGTATCCGGATCATTTTCGATTAGTGAAGGCTTCCAATGGGGATTGGTGTCTCCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCAGCCTTGCAAAGGAGCAATGAGAGCTCTGAATTGGGAGATACGTATAGGCAATTCAAAAGGGGGCATACCACATTGGCTTTTCCTATGAGTTTTCCGAGGGGATATGGAGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATACGAGAGTTGTAGGCAAATCGATCCCAAAAGTGACCTCATGGAGAAAAGAGTTGTTGGGGTTCTACATGAGCTTTTGAGTTTGACTCTTCACAAAAAAACTAAGAGAAACTACTTGAGACGCTTGAGAGAGGAAATGAATCTCCCCCATAAGTTCACTCGAATCTTCACCCGGTATCCTGGAATATTCTATCTCTCCTTGAAGTGTAAGACTACCACTGTTTCTCTCAGGGAAGGGTATCAGCGGGGAAAGCTAGTGAACCCACATCCTTTGACATGTCTAAGGGAGAAGTTCTATCATGTTATGAAGACTGGACTGTTATATCGTGGGAAGGGTGCTGAATTGTTGGTGAAGGAGGGCATTTTGCTTAATAATACAGCCGAGGTGGTGGAGGATGGTTTGGATATTGAATCAGATGAGACAGGTGACGATGAATGTTTTGTGGACAACAACTCACAAGCAGAGGAATCTGATTTAGATTAA 1470 45.92 MQRFGIVDIIRSIHPSTASLTKSLSPPFSRKPRPPGQTFAGRHSPPSTAQPCACRPPFVRKFGIYKMKNLFFSTLILQSRYESPKLFLYHQWRGIAKVRLKWVKNRSLDHIIDTETDLKAACLLKDAIKRSSTGFITAKSIADWQKLLGLTIPVIRFIRRYPTLFHEFPHSRYANLPCFRLTDTALFLDQQESNIHQIHENDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPRYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDTYRQFKRGHTTLAFPMSFPRGYGAQKKVKAWMEEFQKLPYISPYESCRQIDPKSDLMEKRVVGVLHELLSLTLHKKTKRNYLRRLREEMNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTCLREKFYHVMKTGLLYRGKGAELLVKEGILLNNTAEVVEDGLDIESDETGDDECFVDNNSQAEESDLD 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4535382 4538182 - ClCG08G002150.2 Cla08g00221 277876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00221 489 MobiDBLite consensus disorder prediction 19 50 - -
Cla08g00221 489 MobiDBLite consensus disorder prediction 467 489 - -
Cla08g00221 489 PANTHER OS04G0546100 PROTEIN 89 484 - -
Cla08g00221 489 Pfam Plant organelle RNA recognition domain 103 434 IPR021099 GO:0003723
Cla08g00221 489 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 89 484 IPR045040 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00221 - - - csv:105434409 779.63
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00221 Cla09g00894 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00221 Cla-Chr8:4535382 Cla08g00426 Cla-Chr8:12956675 2.41E-84 dispersed
Cla08g00221 Cla-Chr8:4535382 Cla09g00635 Cla-Chr9:5988987 1.23E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1388 . . . . . . . . . Cmo15g00606 . . . . . . Cpe13g00681 Bhi04g01780 . . . . . . Cla08g00221 . Cec08g0008 Cco08g0293 . . Cre08g0194 . . . . . . . Cme03g00320 . . . . . . . . . . . . . . Car15g00555 . . . . . . . . . Cla09g00894 Cam09g0945 Cec09g0948 Cco09g0952 . . Cre09g0914 Lsi08g00552 . Chy03g00307 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007385 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 4 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00221 Cla_Chr08 FPKM 1.603175 1.458798 4.50379 5.082841 1.646861 0.640314 1.685675 15.420379 21.508778 22.629841