Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00262 ATGAGTTGTGCTTCAACACAGCAAGGGTTAGATGTTTGCCATGGAATTGTATGGGTGTTGGTAGCGAGCGTGTCCGGGACGCCTAGCCTACAGAAGTTCCTCGTCTGGGCCTACTTCAAAGCAGACCTCTGGGATAGTTGTGATGGAGGCAGACAGCGTGCGACATCGGCAGTGACGAGCAGGTGTGCAACGGCGGCAGCTACGAGCAAGTCTGCAACGGCGGCGGTGAAAAACAAGTGTGCAACAATGGCAGTGGATGTTCCCAGAGGTGGTAGCGTCTGGTGCGGCAATGAAGATGAGTTGGTTCATAACACTTTGAGTGAACCTGATTTAGATCCTATCACTTATGTGGAAACATCGAATGAGTGGAATGCTTGGCGAGATAACTTAGCACAAGAGATAGCTGAAGCATCGGAAGATATGGTTGAGACAATAGATATGGAGACAAAAGCAATGGGATGTGGGATAATTTTACTAATTGTTATGTGCTACGCCCACCTGAACAGGTTTCAATTTACCACAGAAAAACTTCTCAAATCCCCAGAACTCAAAGAGAACTCAAATTCCTCACCGGAGCCATCAATGGCCGCCCTTCACCAAACCGCCGCCTCTCTCCAGGCCAAGCTCCTTCCAACCGTCCGATTCTCCCGAACCACTCCCGTAAACCTCTCCTTCTCCGCCACTTTTCCTTCCCGCGGACTCCGCCTCAGCCACCACCGCTCTCACGGCGGCGCTAAAATGTCCGCCACAGCCGCTGGAAGCTACGCCGCAGCGCTGGCCGAAGTCGCTTCCTCGAATAACACGCTGGAAGCCACAAGCGGCGACGTGGAGAAGATTGAGAGCTTGTTCGCGGATCCGCAGCCGCATTCGGCGAATTTCTTGAAGATCCTGGTGGACGCGAAGAGGATCGACATCCTGAAGGAGATCGTGACGGAGTTTGAATTGGTATACAACAAGATTACGAACACGGAGCTTGCGGTGGTGAGTTCGGTTGTGCAGTTGGAGCAGCAGCATTTGGCGCAGATCGCGAAGCAGGTGCAGAAATTGAGCGGAGCGAAGAATGTGAGGATAAAGACGCAGATCGATCCGAGTCTGGTGGCTGGATTCACAGTCAGGTTTGGGAATTCTGGATCGAAACTTATTGATTTGAGCGTCAAGAAACAGCTTGAGGAAATTGCTGCTCAGCTTGATCTTGGCAATATTCAACTGGCTGTATGA 1218 51.48 MSCASTQQGLDVCHGIVWVLVASVSGTPSLQKFLVWAYFKADLWDSCDGGRQRATSAVTSRCATAAATSKSATAAVKNKCATMAVDVPRGGSVWCGNEDELVHNTLSEPDLDPITYVETSNEWNAWRDNLAQEIAEASEDMVETIDMETKAMGCGIILLIVMCYAHLNRFQFTTEKLLKSPELKENSNSSPEPSMAALHQTAASLQAKLLPTVRFSRTTPVNLSFSATFPSRGLRLSHHRSHGGAKMSATAAGSYAAALAEVASSNNTLEATSGDVEKIESLFADPQPHSANFLKILVDAKRIDILKEIVTEFELVYNKITNTELAVVSSVVQLEQQHLAQIAKQVQKLSGAKNVRIKTQIDPSLVAGFTVRFGNSGSKLIDLSVKKQLEEIAAQLDLGNIQLAV 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5345009 5352878 - ClCG08G002530.2 Cla08g00262 277917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00262 405 PANTHER ATP SYNTHASE DELTA CHAIN 287 405 IPR000711 GO:0015986|GO:0046933
Cla08g00262 405 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 289 396 IPR000711 GO:0015986|GO:0046933
Cla08g00262 405 PANTHER ATP SYNTHASE-RELATED 287 405 - -
Cla08g00262 405 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 248 322 IPR026015 -
Cla08g00262 405 Pfam ATP synthase delta (OSCP) subunit 280 396 IPR000711 GO:0015986|GO:0046933
Cla08g00262 405 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 355 374 IPR020781 GO:0015986|GO:0016020|GO:0046933
Cla08g00262 405 PANTHER ATP SYNTHASE DELTA CHAIN 212 285 IPR000711 GO:0015986|GO:0046933
Cla08g00262 405 Hamap ATP synthase subunit delta [atpD]. 247 398 IPR000711 GO:0015986|GO:0046933
Cla08g00262 405 PANTHER ATP SYNTHASE-RELATED 212 285 - -
Cla08g00262 405 Coils Coil 127 147 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00262 Cla-Chr8:5345009 Cla11g00961 Cla-Chr11:17194068 1.76E-08 dispersed
Cla09g00383 Cla-Chr9:3740733 Cla08g00262 Cla-Chr8:5345009 4.98E-06 dispersed
Cla08g00262 Cla-Chr8:5345009 Cla03g00907 Cla-Chr3:13326356 6.59E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00262 K02113 - csv:101211740 339.732