Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00264 ATGGACACCCGTAACAAGTTATTGTACCCCGAGAGACCTATGAACATGCTAGGTTCACATGAGGAGGAAGATGATCATGGTGAGGTCTTCCTTGATGAAGCTGACATAATCAATGAAATTCCAGTTGATGAGGAAGATCTTCCTGATGCTGTTGATGAAGAGGGCTCCGATGATGAATATTTTGATGAGGCTGATGATTCCGTTCATACTTTTACTGGCCATACTGGTGAGGTTTACACAGTGGTCTGTAGTCCAATAGATGCCACATTAGTTGCAACAGGGGGTGGAGATGACAAAGGATTTATGTGGAAGATTGGCCGAGGAGATTTTGCCCAGGAGCTTAGTGGTCACAAGGATTCCGTATCTAGCTTAGCATTTAGTGCAGATGGACAACTACTTGCATCAGGGAGTTTTGATGGGCTTATCCAAATTTGGGATACTTCATCTGGGAAACTTAAATGCGCACTTGAAGGCCCTGGAGGGGGAATTGAGTGGGTAAGGTGGCATCCAAGAGGACATCTGGTTTTGGCTGGTTCTGAAGATTCCACCGCTTGGATGTGGAATGCTGATAGAGGTGTCTATCTTAATATATTTTCTGGTCACGGTGCTAGTGTTACATGCGGTGACTTTACTCCGGATGGTAAAATGATATGCACGGGTTCTGATGATGCAACGATGAGGATATGGAATCCAAGAAGTGGAGAAAATATTCATGTCGTGAGAGGTCATCCCTATCATACCGAAGGATTGACTTCTCTAGCACTCACTTCTGATTCAACCCTTGCTCTTACTGGTTCAAAAGATGGTTCTGTTCATATTGTGAATATAGCAACTGGAAAGGTAGTGAATTCTCTGGTTTCCCATTCAGATTCAATTGAATGCATCGGTCTAGCACCAAGCTCCCCTTGGGCTGCAACTGGAGGAATGGATCAGAAGCTCATCATTTGGGATCTTCGACAATCAACACCACGCAGTACATGCGAGCACGAGGATGGAGTAACATGTCTTACTTGGATTGGCACATCGAGATACCTTGCAACTGGATGTGTTGATGGTCGAGTACGAATGTGGGATAGCCTCTCCGGAGAATGTGTTAGAACCTTCACCGGCCACTCCGATGCCATCCAATCTCTCGCGGTGTCTGCCAACAATGAGTACCTTGTTTCTGTTGCTCTTGATAATACAGCTCGGATTTTTGAGATTGCAGAGTATCATTGA 1218 45.07 MDTRNKLLYPERPMNMLGSHEEEDDHGEVFLDEADIINEIPVDEEDLPDAVDEEGSDDEYFDEADDSVHTFTGHTGEVYTVVCSPIDATLVATGGGDDKGFMWKIGRGDFAQELSGHKDSVSSLAFSADGQLLASGSFDGLIQIWDTSSGKLKCALEGPGGGIEWVRWHPRGHLVLAGSEDSTAWMWNADRGVYLNIFSGHGASVTCGDFTPDGKMICTGSDDATMRIWNPRSGENIHVVRGHPYHTEGLTSLALTSDSTLALTGSKDGSVHIVNIATGKVVNSLVSHSDSIECIGLAPSSPWAATGGMDQKLIIWDLRQSTPRSTCEHEDGVTCLTWIGTSRYLATGCVDGRVRMWDSLSGECVRTFTGHSDAIQSLAVSANNEYLVSVALDNTARIFEIAEYH 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5522766 5543779 + ClCG08G002560.1 Cla08g00264 277919

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00264 405 CDD WD40 112 400 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 284 IPR001680 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 71 113 IPR001680 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 368 405 IPR001680 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 285 319 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 114 155 IPR001680 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 326 358 - -
Cla08g00264 405 SUPERFAMILY WD40 repeat-like 112 398 IPR036322 GO:0005515
Cla08g00264 405 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 19 403 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 368 405 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 114 151 - -
Cla08g00264 405 Pfam Anaphase-promoting complex subunit 4 WD40 domain 315 378 IPR024977 -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 156 197 IPR001680 GO:0005515
Cla08g00264 405 ProSitePatterns Trp-Asp (WD) repeats signature. 304 318 IPR019775 -
Cla08g00264 405 Pfam WD domain, G-beta repeat 112 146 IPR001680 GO:0005515
Cla08g00264 405 Pfam WD domain, G-beta repeat 234 273 IPR001680 GO:0005515
Cla08g00264 405 Pfam WD domain, G-beta repeat 156 188 IPR001680 GO:0005515
Cla08g00264 405 Pfam WD domain, G-beta repeat 67 99 IPR001680 GO:0005515
Cla08g00264 405 Pfam WD domain, G-beta repeat 195 230 IPR001680 GO:0005515
Cla08g00264 405 ProSitePatterns Trp-Asp (WD) repeats signature. 133 147 IPR019775 -
Cla08g00264 405 PRINTS G protein beta WD-40 repeat signature 345 359 IPR020472 -
Cla08g00264 405 PRINTS G protein beta WD-40 repeat signature 133 147 IPR020472 -
Cla08g00264 405 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Cla08g00264 405 PANTHER MITOCHONDRIAL DIVISION PROTEIN 1-RELATED 19 403 - -
Cla08g00264 405 Gene3D - 64 403 IPR015943 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 326 367 IPR001680 GO:0005515
Cla08g00264 405 MobiDBLite consensus disorder prediction 1 24 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 239 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 191 230 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 320 358 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 278 317 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 361 400 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 107 146 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 64 104 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 149 188 IPR001680 GO:0005515
Cla08g00264 405 SMART WD40_4 233 275 IPR001680 GO:0005515
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 235 - -
Cla08g00264 405 ProSiteProfiles Trp-Asp (WD) repeats profile. 285 326 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00264 K24725 AAMP; angio-associated migratory cell protein - csv:101211245 776.933
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01517 Cla-Chr6:28680595 Cla08g00264 Cla-Chr8:5522766 7.63E-06 dispersed
Cla08g00264 Cla-Chr8:5522766 Cla10g01163 Cla-Chr10:26178828 2.12E-11 dispersed
Cla09g01016 Cla-Chr9:10689960 Cla08g00264 Cla-Chr8:5522766 2.84E-06 dispersed
Cla10g00428 Cla-Chr10:5739986 Cla08g00264 Cla-Chr8:5522766 6.94E-16 dispersed
Cla11g01433 Cla-Chr11:27922220 Cla08g00264 Cla-Chr8:5522766 4.70E-09 dispersed
Cla08g00264 Cla-Chr8:5522766 Cla09g00656 Cla-Chr9:6239084 1.84E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1306 . . . . . . . . . . . Cma09g01283 . . . . . . . . . . . . Cla08g00264 Cam08g0704 . Cco08g0349 Clacu08g0411 . Cre08g0236 . . . . . . . . . . . Bda13g01432 . . . . . . Cmo09g01240 . . . Car09g01096 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004733 3 1 1 2 1 1 2 2 0 1 1 1 2 1 1 3 1 1 2 1 1 2 1 1 1 1 1 3 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00264 Cla_Chr08 FPKM 7.330045 8.789642 14.969857 16.875959 14.692576 14.917922 16.313036 2.313179 2.208942 2.554466