Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00276 ATGGCGAATCGCGTATACCAAGTCTGGAAAGGAAGTAATAGTGTTGGGGATGATTTGAAACTACTGCTGGCAGAAAACCGAACCTTCAGAGAGAACTACAGGGGTTATACACATCGATCCACTATGAAAAATCAGCCACCTTGGCTATTTGGGAGGGTTCATTGGATCACCAATGAAAAGTTTATCCTTGGTGGGAGACTAATATTTGGGCCTGATGCTAGGTCATTGCTTGTCACAATATTGCTGATTACAGTTCCAGTTATCCTCTTTTGTGCATTTGTTGCAAGACATCTTCGACACAAGTTTTCATCATATAATGCAGGATATGCCATTCTGGTGGTCGCCATTGTTTTTACTATATATGTACTGGTACTTCTTTTCCTTACTTCAGCCCGGGACCCAGGAATAATTCCTCGCAATTCACATCCTCCAGAGGATGAAATCCGTTTTGACTCTTCAGTATCAGTCGATGTTGGGGGAAGGCAAACTCCAAGTCTCCAGTTTCCTCGGACAAAAGAAGTTATTGTAAATGGGCTTCCAGTAAGAGTAAAGTATTGTGACACATGTATGCTATATCGTCCTCCTCGTTGCTCCCATTGCTCAATTTGCAACAATTGTGTGGAACACTTTGATCATCACTGCCCTTGGGTGGGTCAATGTATTGGACTGGTGCTGATGGATCAATATGAGAGCACTGTTTGGAAGGCAATGAAAGAATCACCTGCATCAGTCATATTAATGGCCTACTGCTTTGTCTCCCTTTGGTTTGTTGGTGGTCTAACTGGCTTCCATTTGTATCTTATTGGCACAAATCAGACAACCTATGAAAATTTCCGGTACAGAGCTGATAATAGGATCAATGTTTTCAACCGGGGTTGTGCGAATAATTTTCTTGAAGTATTTTGCTCGAAAGTAAAGCCATCAAGGAACAATTTTCGAGCTTTCGTCCAAGAGGAGGTGCCAAGGCCTCAAGTTCTTCCTCAGTTGCCCCGTGCTGCAGCCGATGATTTGGCTGCACATCCACGTTCAAAAGTCGAAGATGATCTTGATATAGGTGAAGACTTGTTGAAAATCTCCCAGCGTCGGAACATCGATGAAATCTCAGAGGACATACGTAGCAGAGGGAGTAATGGGCCGCCTCTTAGTGCTCCAGAGACGGACCCTGTTTTGGAATCTGATCATCAAGCACCAACAATTCGATCAGATCGGCATTCAAGTTGGGGAAGAAGAAGCGGTAGCTGGGAAATTGCAACCGAGGTCTTTGCCAACTCGAACGTGACTGAAAGCCGAAGTTACGTAACATCAAAGGAGGCATTTCAGTGA 1323 43.99 MANRVYQVWKGSNSVGDDLKLLLAENRTFRENYRGYTHRSTMKNQPPWLFGRVHWITNEKFILGGRLIFGPDARSLLVTILLITVPVILFCAFVARHLRHKFSSYNAGYAILVVAIVFTIYVLVLLFLTSARDPGIIPRNSHPPEDEIRFDSSVSVDVGGRQTPSLQFPRTKEVIVNGLPVRVKYCDTCMLYRPPRCSHCSICNNCVEHFDHHCPWVGQCIGLVLMDQYESTVWKAMKESPASVILMAYCFVSLWFVGGLTGFHLYLIGTNQTTYENFRYRADNRINVFNRGCANNFLEVFCSKVKPSRNNFRAFVQEEVPRPQVLPQLPRAAADDLAAHPRSKVEDDLDIGEDLLKISQRRNIDEISEDIRSRGSNGPPLSAPETDPVLESDHQAPTIRSDRHSSWGRRSGSWEIATEVFANSNVTESRSYVTSKEAFQ 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 5898679 5906220 - ClCG08G002670.2 Cla08g00276 277931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00276 440 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 59 223 - -
Cla08g00276 440 PANTHER ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 224 437 - -
Cla08g00276 440 PANTHER S-ACYLTRANSFERASE 59 223 - -
Cla08g00276 440 PANTHER S-ACYLTRANSFERASE 224 437 - -
Cla08g00276 440 MobiDBLite consensus disorder prediction 367 410 - -
Cla08g00276 440 Pfam DHHC palmitoyltransferase 184 222 IPR001594 GO:0016409
Cla08g00276 440 ProSiteProfiles DHHC domain profile. 184 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00276 K16675 ZDHHC14_18; palmitoyltransferase ZDHHC14/18 [EC:2.3.1.225] - csv:101210342 746.503
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00276 Cla-Chr8:5898679 Cla08g00723 Cla-Chr8:19526429 0 dispersed
Cla08g00276 Cla-Chr8:5898679 Cla05g00240 Cla-Chr5:2187367 3.34E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1350 . . . . . . . . . Cmo15g00592 . . . . . . Cpe13g00691 Bhi04g02172 . . . . . . Cla08g00276 Cam08g0717 Cec08g0271 Cco08g0364 Clacu08g0427 . Cre08g0252 Cone4ag1482 Cone7ag1462 . . . . . Cme03g00914 Blo17g00138 Blo18g00149 . Bda13g01422 Bpe02g01102 Bpe14g00435 Bma01g01434 Bma02g00157 . . . . . . Car15g00544 . . . . . . . . . . . . . . . . Lsi08g00248 . Chy03g00271 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002682 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 2 1 3 3 2 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00276 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0