Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00283 ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGAGGCTGACCAACGTTGCGGTGGTTCGTTTGAAGAAACACGGTCTTCGTTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCTTGGCGCTCTGGCGTGGAAAAGGATTTGGATGAGGTCTTGCAATCACAAATTGTTTATTCGAATGTTTCGAAAGGAGTTCTTGCAAAAACAAAAGATTTAAAAGTAGCTTTTGGTACAGATGATCAGATGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAATTGCAGGGAAGGAGAGGGAGGCTCAATTATCTAATCAGTTTCGTGATATCGCAACCATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAGCGACTCCTGCGTGAAATTCATTTTGCTGTTGATCCAAACCACAGCTCAAAGAAACAGGCACTAGAGGTCATTCATGAGCTCCAGAAACAGTTCCCAATTAAACGTTCGCCTATGAGAATACGATATGTTGTACCTGAACAGAACTCCCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCATTTCCAATGATCAGTCTGGAAATCAGCAACGAAGCATTATTTGTGAATTGGATCCTAGCTTTTATCGAGACTGTAATCCATTAATGAGTGAACTACAAGGCAGATTTGAAGTTCTCTCTTTTTGTTTGCACGAGGAAGGGGACACCAATGTGGATCAATACGACGATGATTATGAGAATATGGAACTGCCACCAAGGCAAGTAAAGGAACCGGAATCGGCTATTCCCCAGCTAAGTGAAGCTTTACAAAAGCAGACAATCTCTGTCAATGGCGAGAATGCCCCGAAGGAAGGAAAACGCTGCAGCACATGCAACATAGTTGTGGGGGATGCTACTCAGTTTAGAGAGCATCACAAGAGTGAATGGCATAAGCATAATGTCAAGCGCAAAACCAAGAATCTTCCACCTTTGACTGAAGAAGAGTGCACGGTAGAATTGGCAATGGGCGAGTCGGAGTCCGACCTGAAGGAGTATTCATTTTGA 1080 43.33 MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYSNVSKGVLAKTKDLKVAFGTDDQMEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLLREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYVVPEQNSPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFYRDCNPLMSELQGRFEVLSFCLHEEGDTNVDQYDDDYENMELPPRQVKEPESAIPQLSEALQKQTISVNGENAPKEGKRCSTCNIVVGDATQFREHHKSEWHKHNVKRKTKNLPPLTEEECTVELAMGESESDLKEYSF 359
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 6118715 6122222 + ClCG08G002740.1 Cla08g00283 277938
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00283 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Cla08g00283 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Cla08g00283 359 PANTHER BNAANNG06530D PROTEIN 1 359 - -
Cla08g00283 359 SUPERFAMILY beta-beta-alpha zinc fingers 288 329 IPR036236 -
Cla08g00283 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 359 IPR039100 -
Cla08g00283 359 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 231 IPR002140 GO:0042256
Cla08g00283 359 Gene3D - 1 96 IPR036786 -
Cla08g00283 359 Gene3D - 100 172 IPR037188 -
Cla08g00283 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Cla08g00283 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Cla08g00283 359 SMART ZnF_U1_5 295 329 IPR003604 GO:0003676|GO:0008270
Cla08g00283 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Cla08g00283 359 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Cla08g00283 359 Gene3D - 174 251 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01792 Cla-Chr5:29806062 Cla08g00283 Cla-Chr8:6118715 7.29E-06 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00283 K14574 - csv:101215380 679.863