Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00312 ATGTCGATGCTTAACTCCTTCTTCAACAAGGGCTTCAGGGCTGCCCAGTGTAAAACACTGCTTAAATTGACAATTCCACGAATAAAGCTGCTGAGGAATCGAAGGGAGATCCAGCTTAAGCAGATGCGCCGAGATATAGCTAAGCTTCTCGAGACAGGACAAGAAGCTACTGCTCGCATTCGGGTAGAGCATATAATCCGAGAAGAGAATATGATGGCTGCTCAGGAAATTCTTGAATTGTTTTGTGAGCTTATTGTTGTTCGCCTTCCAATTATTGAAACACAAAGGGAATGTCCGCTAGACTTGAAAGAAGCGATCTCAAGTGTGTGTTTTGCTGCTCCAAGGTGTGCTGATCTTACAGAGCTTCTCCAGGTTCAGATGCTTTTTGCTGCTAAATATGGGAAGGAATTTGTATCAGCTGCAACTGAGCTCATGCCTAACTGTGGTGTTAATCGTCAGTTGATAGAGCTGCTGTCTGTTCGTGCTCCTTCACCTGAAAAGAAACTGAAGCTGTTAAAGGAAATCGCCGAAGAGCACGACTTAGATTGGAATCCTGCTGAAACTGAAGCTGAGTTTAACAAATCTCCAGAGGATTTGCTTAATGGATCAGCGCAGTTTGTCAGCACATCAAAATTACCCCTTCCGCAAGAGAAACACAATGAAATATCCAATGCTACTCCTGATTTGGCTAGTGCGCCACAACCTGATTCTGATTCTGAATTGGACATGTTAGACTTTCCTGAAGTTCCAAAGATATCGGTATGTCCGCAGCCTACTATAAATGCTGGCTCTGCATCGTCAATGATCCCACCTCCATCTGTGTCGCCACCGCCTGAAACTGATCTTTCTTCATTGAAGTATTCTGGTATTCCTGAAACACCGCCCCAAGATCTACACTTGAAACATGAGGAGGTGACTTCAGTGAGATCTGTTTCACCCAGCAACGATCAAATGAATATTTCTGTTGGTGAAGATAAACAGTTTTTGCCTTTTATTACTCCCCCATCATTGTCATCTTCATTCCCTCATAGACAAACTGATTTGTCGCCACCCTCCGATCCAACGAACCCTGAGGAGATGTTTGGTTTCAAATCACAGATCAAACAGGAGTTAAATTCACCACTACCCTCTGTTTCAAGGACCCCTGAGGAGAAGTTTGGTTTCAGACCACAGTTTGAAGCAGAGATAAATTCACCACTGTCCCCTGTTTCAAGGACAATGAGTGAGATCAATGCAGATGTCGGTGTGGATTTGCAGGACGTGTTGGCAGCTGCACAGGCTGCTGCTGAAACTGCTGAACGTGCTGCCGCTGCAGCTCGCTCTGCAGCTAGTCTTGCAAAGGTTAGAATTGACGAGCTCACAAAGAAAAAGAATGATAAGGACCGTGAAATTAGTTGCGAAAATCCATTCCACGGAGCTACTGCAAGTCCACCAGATCATAAAGAAATATTCCAACTAAACCAACAAGATTCTCTGGGTCATCATTATTCTTCTGCTGTGCCATATTATTCACAAGATTCTTTCCAAGAACATCACAAACTAAGCCGCGATTCAGATGTATCTGATCACAACCAACTCAAGCCGGAGAAATCGGGTTACGATTCCTCTCCCAGTGATTCACCAACTGAACACATAGCAGTCCCTCATCAGCCCCAGAGGCTCCCATCAATGGACGATGACCCATACTTTTCATACCCGAATTTATTTACATCACAGAAACCAAATCCAGGATCTGATCATTCATCAGCATCAGCTGGTGGTTCCTGA 1767 44.37 MSMLNSFFNKGFRAAQCKTLLKLTIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMMAAQEILELFCELIVVRLPIIETQRECPLDLKEAISSVCFAAPRCADLTELLQVQMLFAAKYGKEFVSAATELMPNCGVNRQLIELLSVRAPSPEKKLKLLKEIAEEHDLDWNPAETEAEFNKSPEDLLNGSAQFVSTSKLPLPQEKHNEISNATPDLASAPQPDSDSELDMLDFPEVPKISVCPQPTINAGSASSMIPPPSVSPPPETDLSSLKYSGIPETPPQDLHLKHEEVTSVRSVSPSNDQMNISVGEDKQFLPFITPPSLSSSFPHRQTDLSPPSDPTNPEEMFGFKSQIKQELNSPLPSVSRTPEEKFGFRPQFEAEINSPLSPVSRTMSEINADVGVDLQDVLAAAQAAAETAERAAAAARSAASLAKVRIDELTKKKNDKDREISCENPFHGATASPPDHKEIFQLNQQDSLGHHYSSAVPYYSQDSFQEHHKLSRDSDVSDHNQLKPEKSGYDSSPSDSPTEHIAVPHQPQRLPSMDDDPYFSYPNLFTSQKPNPGSDHSSASAGGS 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7350055 7355140 - ClCG08G003020.1 Cla08g00312 277967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00312 588 MobiDBLite consensus disorder prediction 509 529 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 252 297 - -
Cla08g00312 588 Coils Coil 32 59 - -
Cla08g00312 588 Coils Coil 422 442 - -
Cla08g00312 588 PANTHER IST1 FAMILY MEMBER 1 578 IPR005061 GO:0015031
Cla08g00312 588 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 1 578 - -
Cla08g00312 588 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031
Cla08g00312 588 MobiDBLite consensus disorder prediction 224 243 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 530 545 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 565 588 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 457 479 - -
Cla08g00312 588 Gene3D - 5 193 IPR042277 -
Cla08g00312 588 MobiDBLite consensus disorder prediction 509 588 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 335 390 - -
Cla08g00312 588 MobiDBLite consensus disorder prediction 335 353 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00312 - - - csv:101208940 967.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02021 Cla-Chr1:34790521 Cla08g00312 Cla-Chr8:7350055 2.83E-85 dispersed
Cla03g00920 Cla-Chr3:14758898 Cla08g00312 Cla-Chr8:7350055 2.27E-33 dispersed
Cla03g01521 Cla-Chr3:30852529 Cla08g00312 Cla-Chr8:7350055 2.59E-73 dispersed
Cla08g00312 Cla-Chr8:7350055 Cla08g00538 Cla-Chr8:16385989 2.65E-32 dispersed
Cla08g00312 Cla-Chr8:7350055 Cla05g02312 Cla-Chr5:34717714 2.82E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00312 Cla_Chr08 FPKM 8.791589 9.316684 2.404121 2.457839 0.97277 0.726559 0.612568 7.615932 7.331424 8.789895