Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00315 ATGATGCTTCAGCCATGGCGCCGTCGATTTAAACTCCGTGGTATTACTTCGATGATGCCGATTGAGGAATCCTTATGGCGTACACGGGCGGTAGAAGGAGGAGGGTTCTTTTCTTCTTCAGCATCTGGGTATAGCAAGGGTTTGACCCTTCTCCTTTTGGGTCAAAAGGACGAAGATAAACCCATGAGAGTTTCTCCGTGGAATCATTACCAGTTGGTGGACCACGAATCAGAATCTGACCTCCAGCTGGCTTCCACAAAGAACCGCATTTCCCGCGGCTGTGCCTCCTTTGTTTGCTTTGGTCGCACTTCCGCAGGGCTCGACAGTTCCCCTTCTCCTCTTAAAGTTGGCCCAACCTTACCACATGATTCTTTGCCTGGGTCTATAAGTACCGATGAGGGGAAAGATGAAATTCCTGTGGAAGATGGTAATACTTTCAGAAATATAGCCCTTAAAAGTAGCTTGAAAAGGCCAAGTAATGGTATTTCAATTTCTCATCAGAATTCTCATGAAAGTGAAACAATGAGTAAAAAGGATGGTGATATACGTTGTCTTACTAATAGAAGGAAAGTTCAGTGGACTGATGCTTGTGGGAGTGAACTTGTAGAGATCAGGGAATTTGAGCCCAGTGAAGCAGATCTTTCCGATGACGAGTTCGAAAATGGAAACAAGAGAAGTAGGATGCTGCAGTTTTGCCAGACATAA 705 45.11 MMLQPWRRRFKLRGITSMMPIEESLWRTRAVEGGGFFSSSASGYSKGLTLLLLGQKDEDKPMRVSPWNHYQLVDHESESDLQLASTKNRISRGCASFVCFGRTSAGLDSSPSPLKVGPTLPHDSLPGSISTDEGKDEIPVEDGNTFRNIALKSSLKRPSNGISISHQNSHESETMSKKDGDIRCLTNRRKVQWTDACGSELVEIREFEPSEADLSDDEFENGNKRSRMLQFCQT 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7400253 7411774 + ClCG08G003050.1 Cla08g00315 277970

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00315 234 MobiDBLite consensus disorder prediction 158 178 - -
Cla08g00315 234 PANTHER LOW AFFINITY POTASSIUM TRANSPORT SYSTEM PROTEIN 30 225 - -
Cla08g00315 234 MobiDBLite consensus disorder prediction 108 141 - -
Cla08g00315 234 PANTHER LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP2, CHLOROPLASTIC 30 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00315 - - - mcha:111022876 323.168
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00315 Cla-Chr8:7400253 Cla08g00751 Cla-Chr8:19852369 2.13E-37 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1262 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00315 Cam08g0751 Cec08g0301 . Clacu08g0464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00259 . . .
Vvi18g1341 Blo01g01740 Blo12g00776 . . . . . Bma01g02518 Cmo04g02573 Cmo15g00588 . Cma09g01193 . . . . Cpe13g00695 Bhi04g02163 . . . . . . Cla08g00315 Cam08g0751 Cec08g0301 . Clacu08g0464 . . . . . . . . . Cme03g00294 Blo17g00135 Blo18g00147 . Bda13g01419 . Bpe14g00438 Bma01g01432 Bma02g00155 . . Cmo09g01215 . . Car04g02366 Car15g00540 Cpe01g02128 . . . . . . . . . . . . . . . Lsi08g00257 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005768 2 1 4 3 3 1 1 1 1 0 1 2 1 0 0 1 1 4 1 1 0 1 1 1 1 1 0 2 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00315 Cla_Chr08 FPKM 13.947279 15.497792 15.948503 14.508986 25.823214 24.774466 24.916134 24.820704 24.105972 22.496819