Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00325 ATGGGCTGTGCACAAACGAAGCATTCGGTGAGTTCGCCCTCTGGGGGAATTGAGAAGCTGAAATTGGAAAATGGGTATGCTGGGATTGAAGGTTTTCTTGCTCATCGGAGGTCTGTCAGGCAGAGGAGATATGTCGGCAGGGAGTCGTCTGAAGCAGAGAAGCCTCACGGCGGTGATGGCGGCGGCGGGAATGGCCAATTTGGTTCAGAGAAGATTGAGCTAGTGGATGGGTGGCCCAAATGGCTTACTAGCAATATTCCTAAGCATGTGTTGGCTGGCTTGGTACCCAAGAGTGTGGAGGCCTATGACAAGCTTGACAAGGTAGGCCAAGGAAGTTACAGCAATGTGTACAAAGCTCGAGATAGGGAAAGTGGAAAGATTGTTGCCCTTAAGAAGGTCCGTTTTGATACATCAGAACCTGAGAGTGTGAAGTTCATGGCCAGAGAAATTATGATACTCCTGAAACTGGATCACCCCAACATTGTCAAACTTGAAGGATTGGCTACCTCAAGAATGCAGTTCAGTCTTTATCTTGTTTTTGATTTTATGCAGACTGATTTAGCCCGAGTTATTTCCCACCCCGATGTATGCCTTACGGAGCCTCAGGTTAAATGCTATATGCATCAGCTACTCTCTGGTCTGAAGCATTGCCATGATAAGGGGATTTTGCATCGTGATATCAAAGGATCGAACCTGTTAATTGACAAAAATGGGACACTGAAGATTGCCGATTTTGGGCTTGCCATTTTCATCAGTCCAAAGAGGCCTCTTACCAATCGTGTTGTGACTCTTTGGTATCGAGCTCCAGAGCTATTGTTAGGTGCTACAGATTATGGAGTTGGCATTGATCTATGGAGTGCTGGATGCCTCTTGGCAGAAATGTTCACGGGAAGGCCAATTCTGCCAGGTCGAACAGAGGTTGAACAACTCCACAAAATTTTCAAGTTATTTGGTACACCATCTGAGGAATATTGGAGAAAACTCAAGCTGGCACCAACTTTCAGACCTCCACAGTCGTATAGACCTACTCTCGGAGAGTTTTTTAAGCATTTTCCATCATCTTCTCTAGGCCTACTCAGCACTTTACTTGCTTTGGAGCCTTCATATCGTGGCTCTGCATCTTTAGCCCTCGAGAATGAATTCTTTTACACAAGCCCACTGGCATGCGGCCTTTCAGATCTTCCTGTAATCCACAGTGAGCCCGACGAACTGGATCAAACGAATCAGCAGAAGTGTAGGAATGCTAAAGTGACAAGGCGTTCTCACACACACCGAGAGCGCCGGAGGAAAGATTTAACCGCAGGAATACCAAAAGAAGAATCAAACATTCCCAAACAGGTTTCACAGCAAACGGGAGATGGTGACAAACAAGGTGAAGAGCGAGGGAGTACTATGACAAGCACCTCCTCAAGTGTTAACATGGGAGGGCAAAAGGGGAGTAAAACGAAGAGCAGTTCCTCAAGTGTTAACACAGCAGCGCGAAAGGGGAGTACAACGACAAGCATTTCCTCAAGTGTTAACACAGGAGGGGGAAAGACGATGAACACCTTCTCGAGTGTGAACATGGGAGGGGGAAAGGGAAGCTCTCACTTCTTACTATCTCCAATTCCATATTCTACTAGGAAATCATCAAGAACTCAAGGCCATCTTGAGGGTGCTAAGAACTTCAACTTGCCTTCATTGCCTAAGACGAGAGAATACTCAACCTTCAACAACGAAGAGCATGGTGCATGTACCACAGGTCAGGTTCGGAGATCAGTCTCGACCAGAGATTTCAGGAACTTGGGGCGTAAAGAGCATTTGAAATTATATGTCGATGCTTAA 1824 46.27 MGCAQTKHSVSSPSGGIEKLKLENGYAGIEGFLAHRRSVRQRRYVGRESSEAEKPHGGDGGGGNGQFGSEKIELVDGWPKWLTSNIPKHVLAGLVPKSVEAYDKLDKVGQGSYSNVYKARDRESGKIVALKKVRFDTSEPESVKFMAREIMILLKLDHPNIVKLEGLATSRMQFSLYLVFDFMQTDLARVISHPDVCLTEPQVKCYMHQLLSGLKHCHDKGILHRDIKGSNLLIDKNGTLKIADFGLAIFISPKRPLTNRVVTLWYRAPELLLGATDYGVGIDLWSAGCLLAEMFTGRPILPGRTEVEQLHKIFKLFGTPSEEYWRKLKLAPTFRPPQSYRPTLGEFFKHFPSSSLGLLSTLLALEPSYRGSASLALENEFFYTSPLACGLSDLPVIHSEPDELDQTNQQKCRNAKVTRRSHTHRERRRKDLTAGIPKEESNIPKQVSQQTGDGDKQGEERGSTMTSTSSSVNMGGQKGSKTKSSSSSVNTAARKGSTTTSISSSVNTGGGKTMNTFSSVNMGGGKGSSHFLLSPIPYSTRKSSRTQGHLEGAKNFNLPSLPKTREYSTFNNEEHGACTTGQVRRSVSTRDFRNLGRKEHLKLYVDA 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7581863 7586943 + ClCG08G003130.1 Cla08g00325 277980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00325 607 MobiDBLite consensus disorder prediction 43 66 - -
Cla08g00325 607 SMART serkin_6 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00325 607 Gene3D Transferase(Phosphotransferase) domain 1 185 431 - -
Cla08g00325 607 SUPERFAMILY Protein kinase-like (PK-like) 97 385 IPR011009 -
Cla08g00325 607 ProSiteProfiles Protein kinase domain profile. 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00325 607 MobiDBLite consensus disorder prediction 461 516 - -
Cla08g00325 607 Pfam Protein kinase domain 102 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00325 607 Gene3D Phosphorylase Kinase; domain 1 92 184 - -
Cla08g00325 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Cla08g00325 607 ProSitePatterns Protein kinases ATP-binding region signature. 108 131 IPR017441 GO:0005524
Cla08g00325 607 MobiDBLite consensus disorder prediction 402 516 - -
Cla08g00325 607 PANTHER CELL DIVISION PROTEIN KINASE 57 503 - -
Cla08g00325 607 PANTHER CYCLIN-DEPENDENT KINASE 57 503 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00325 K08819 CDK12_13; cyclin-dependent kinase 12/13 [EC:2.7.11.22 2.7.11.23] - csv:101209601 976.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00325 Cla-Chr8:7581863 Cla05g00613 Cla-Chr5:5686445 2.60E-147 dispersed
Cla08g00325 Cla-Chr8:7581863 Cla03g01582 Cla-Chr3:31590266 8.20E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1343 Blo01g01738 . . . . . . Bma01g02517 . . . Cma09g01247 Car01g00780 . . . . Bhi04g02165 . . . . . . Cla08g00325 Cam08g0756 Cec08g0290 . Clacu08g0468 . . Cone4ag1474 . . . . . . Cme03g00895 . . Bda11g00865 . . . . . . . Cmo09g01213 . . . Car09g01082 . . . . . . . . . . . . . . . . Lsi08g00253 . Chy03g00280 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002491 3 2 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 1 0 1 2 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80722 PF00069 Pkinase 1.30E-67 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00325 Cla_Chr08 FPKM 0.0 3.499418 0.0 0.0 0.0 0.0 2.471104 5.414989 4.233429 4.838921