Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00327 ATGGAGAAGAGCAAATCATTTTCTAAGTACTCATCCTCAACCTCGGGCGAGTTCGGTTTCCAAACCCGATCCAACTCATACAATTTCAATGGCCCGACCGCGAAGGCAACTGGGTTCTCGACCTCGGCCGATCCCGAGCTCCAAAGGAAGAGAAGAATTGCATCTTATAATGTTTTCAACATGGAAAACAAAGTAAAATCCAGTGTAAAGAACAGCTTCAAGTGGATCAAAACTAAGTTTAGTGACATTCGCTATGGTTTGCGCTTTATGAACTATGAAGATTCCTTGCCAAAAATGTGTCATTGA 306 42.48 MEKSKSFSKYSSSTSGEFGFQTRSNSYNFNGPTAKATGFSTSADPELQRKRRIASYNVFNMENKVKSSVKNSFKWIKTKFSDIRYGLRFMNYEDSLPKMCH 101
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 7734419 7736322 + ClCG08G003150.2 Cla08g00327 277982

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00327 101 Pfam Domain of unknown function (DUF3511) 43 86 IPR021899 -
Cla08g00327 101 PANTHER DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED 1 82 - -
Cla08g00327 101 PANTHER OS06G0686600 PROTEIN 1 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00327 - - - cmax:111472683 140.969
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01553 Cla-Chr1:30172774 Cla08g00327 Cla-Chr8:7734419 5.57E-17 dispersed
Cla08g00327 Cla-Chr8:7734419 Cla08g01007 Cla-Chr8:22822509 1.80E-12 dispersed
Cla08g00327 Cla-Chr8:7734419 Cla03g01484 Cla-Chr3:30351270 1.40E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1344 . Blo12g00777 . Bda03g00401 . . Bma04g00382 . . . . Cma09g01197 . . . . . . . . . . . . Cla08g00327 Cam08g0757 Cec08g0287 . Clacu08g0471 . . . . . . . . . Cme03g00903 . . . . . . . . . . Cmo09g01212 . . . Car09g01081 . . . . . . . . . . . . . . . . Lsi08g00252 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009055 2 0 2 2 1 1 2 1 1 0 1 1 1 1 1 2 1 2 2 1 1 1 1 0 1 1 0 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00327 Cla_Chr08 FPKM 17.886215 18.592381 53.188099 53.706123 8.510989 8.531189 9.213282 11.971934 12.283988 12.254842