Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00355 ATGTCGTTTCGTAGTATAGTTCGTGACGTTAGAGAGGGGTTTGGAAGTTTATCCCGACGTAGTTTTGAGGTGAGACTGCCCGGTCACCAGCGGGGTAAATCTCATGGATCAGTCCATGATTTGCAAGACCAACCTCTGGTAATTCAGAATAGTCGTTGGGCTAGCCTCCCGCCTGAGCTATTGCGGGATGTAGTCATGAGACTGGAGAAGAGTGAGAGTGTGTGGCCTGCTCGCAAACATGTTGTTGCTTGTGCTGCTGTTTGTAGGTCGTGGAGGGAAATGTGCAAAGAGATAGTAAAAAGTCCCGAGTTCTCTGGAAAAATCACCTTCCCTGTCTCTTTAAAACAGCCAGGGACTCGTGATGGAACCATTCAATGCTTCATTAAGAGGGACAAATCTAATTTGACTTATCACCTTTACCTTTGCCTTAGTCCTGCTTTACTTGTTGATAATGGGAAGTTTCTTCTTTCTGCCAAAAGAACGAGGAGAACGACCTGCACCGAATACGTGATCTCCATGGATGCAGATAATATATCAAGATCGAGCAACACCTACATTGGAAAACTACGGTCAAATTTTCTTGGGACCAAGTTCATTATCTATGATACACAACCTCCATACAACAATGCCCAGATTTCCCCACCGGGCCGTAGCCGTAGATTCTACTCGAAGAAAGTTTCCCCAAAAGTCCCAACTGGTAGCTATGAGATTGCTCAAGTCACTTACGAACTGAATGTTCTTGGTACAAGAGGCCCTCGAAAGATGCACTGCACGATGCACTCTATCCCTGCCTCGTCTCTTGAGGCCGGTGGTACTGTTCCGGGCCAGCCCGAGGTTGTCCCTCGACTCCTTGGGGATTCATTTCGGAGTATATCATTCTCCAAGTCTGTCTTCAATTCTACAGAGTTCAGTAGTTCCCGTTTCTCTGACATTGTCGGCTCTCAAGACGAAGATCAAATGGGGAAGGAGAGACCATTGATTCTTAGGAACAAGCCACCGCGGTGGCATGAGCAGTTGCAGTGTTGGTGCCTTAATTTCCGGGGGCGAGTGACCATTGCTTCTGTCAAGAACTTTCAACTGATAGCTGCTACAGAGCCATCTTCTTCCACAGCTACAAACCAATCACAGCCAAACCAACACGCCCAATCTTCCCAATCTGACCATGACAAGATCATTCTTCAATTTGGGAAGGTTGGGAAGGACATGTTTACGATGGATTACCGATATCCATTGTCAGCATTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTTGACACCAAATTGGCTTGTGAATAA 1296 46.37 MSFRSIVRDVREGFGSLSRRSFEVRLPGHQRGKSHGSVHDLQDQPLVIQNSRWASLPPELLRDVVMRLEKSESVWPARKHVVACAAVCRSWREMCKEIVKSPEFSGKITFPVSLKQPGTRDGTIQCFIKRDKSNLTYHLYLCLSPALLVDNGKFLLSAKRTRRTTCTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQISPPGRSRRFYSKKVSPKVPTGSYEIAQVTYELNVLGTRGPRKMHCTMHSIPASSLEAGGTVPGQPEVVPRLLGDSFRSISFSKSVFNSTEFSSSRFSDIVGSQDEDQMGKERPLILRNKPPRWHEQLQCWCLNFRGRVTIASVKNFQLIAATEPSSSTATNQSQPNQHAQSSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8941658 8946068 - ClCG08G003430.1 Cla08g00355 278010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00355 431 SUPERFAMILY Tubby C-terminal domain-like 102 431 IPR025659 -
Cla08g00355 431 Pfam F-box domain 53 100 IPR001810 GO:0005515
Cla08g00355 431 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 388 407 IPR000007 -
Cla08g00355 431 PRINTS Tubby superfamily signature 409 431 IPR000007 -
Cla08g00355 431 MobiDBLite consensus disorder prediction 367 387 - -
Cla08g00355 431 Gene3D - 48 101 - -
Cla08g00355 431 ProSitePatterns Tub family signature 2. 416 431 IPR018066 -
Cla08g00355 431 Gene3D Tubby Protein; Chain A 112 425 IPR025659 -
Cla08g00355 431 Pfam Tub family 114 426 IPR000007 -
Cla08g00355 431 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Cla08g00355 431 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 431 - -
Cla08g00355 431 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515
Cla08g00355 431 PANTHER TUBBY-RELATED 1 431 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00612 Cla-Chr5:5680576 Cla08g00355 Cla-Chr8:8941658 1.37E-150 dispersed
Cla05g01062 Cla-Chr5:10955210 Cla08g00355 Cla-Chr8:8941658 0 dispersed
Cla05g01926 Cla-Chr5:31115517 Cla08g00355 Cla-Chr8:8941658 8.48E-135 dispersed
Cla07g00980 Cla-Chr7:25993606 Cla08g00355 Cla-Chr8:8941658 1.07E-121 dispersed
Cla08g00355 Cla-Chr8:8941658 Cla08g00713 Cla-Chr8:19403833 0 dispersed
Cla08g00355 Cla-Chr8:8941658 Cla06g00505 Cla-Chr6:6119251 4.37E-155 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61517 PF01167 Tub 1.20E-118 CL0395 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00355 K19600 - csv:101206041 845.884