Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00363 ATGCTTGGGGACTCCACTACTTCCGTCTTGGGCGGCGGCGCCGGAGGAGGAGAGGCCGCTGTGCCGGAGACGACTCATCATCACGATGGACTGATGGGGGACATGGAGGAGAATAATAACAATTCTGGTGAGGATGAGAGAGGGAGAAGCGGAGGTGGCGGCGGAGACGACGGTGACCGGAGCTTCGGCGGAAACCGGTGGCCGAGACAAGAAACTTTAGCTCTCTTGAAAATACGGTCAGAAATGGACGTGGCTTTTCGAGATGCAAGCGTTAAAGGCCCTTTGTGGGAACAAATTTCCAGGAAATTGGGGGAGCTTGGGTATCATCGAAGTGCAAAAAAATGCAAGGAGAAATTTGAGAATGTTTACAAATATCACAAAAGAACTAAAGAAGTTAGAAGTGGGAAACCGGATAGCAAAACTTATAAGTTCTTTGAACAATTAGAAGCTCTTGAGAATCACCCTCCTCTTAATTTCCACTCCCATTTGTCTAAACCAACTCCTCCGCCGCAGCCGCCACCGCCTACCGCCGTCATTTCCCCCATTCCTTCAAGTACTGTTCCATCCACCACTCTACCTCACTTGATGAACATATCATTCTCTCAACCAAACCCCACAATTCATCTCCCATCTCCTCCGCCCCCTCCTGCTCCGTTGCCATTGAATAACCCTACAAGTTTACCCACCACCGTCCCTCCCTCCATGCCGTTTCAAATCAATGTGCCTTCGGCGGGAGTGGGGTTTCAGAGCATTGAAGCGGATCTCATCTCGAACTCGACGTCTGATGATATCAATTCGTCAACGTCATCAGATGAGGCGTCGAGAAAGAGGAGGAGGAAGAGGAAATGGAAGGACTTTTTTGAGAGATTGATGAAGGAAGTGATTCAAAAGCAAGAGGAAATGCAAAAGAGATTCTTGGAAGCAATTGAGAAGAGGGAGCAAGAGAGAGTTGTGAGAGAAGAAGCTTGGAGGATGCAAGAGATGGCCAAAATCAATAGAGAAAGAGAGATTTTAGCTCAAGAAAGATCAATGGCAGCTGCAAAAGATGCTGCGATTACATCGTTCCTTCAAAAAATAACTGAATCCCAACACAACAATACCAACAACAACGCATCACAACCGTCACCACCGCCCCCGCCACCGCCACCGTCCCAACAACAACAACAACCAATTCCAACGTCAAATCCAACACCAGTCGTGCAACCTTCACCGCGACCGCCACCTCCGGCCGCACCACAAGCTTCCACATTGCAAGTTGTTGTTCCCAATTCCACCCCACAAAAAGTGGGGAACAATAATGAATTGTTGCAAATGGAAATCATGAAAATGGATCATAATGGTGGGGAGAATTATAGCATTAGCCCAGCTTCAAGCTCATCAAGATGGCCAAAAGTGGAAGTTCAAGCACTGATCAAATTGAGAACAAACCTTGAAACCAAATATCAAGAGAATGGGCCAAAAGGGCCTTTATGGGAAGAGATATCATCAGCCATGAAGAAACTTGGGTACAATAGAAATGCAAAGAGGTGCAAAGAGAAGTGGGAAAACATAAACAAATACTTCAAGAAAGTGAAGGAAAGTAGAAAAGCAAGGCCTGAAGATTCCAAGACTTGCCCTTATTTTCACCAGCTTGATGCTTTGTATAGGGAGAAGAGCAACAACACGAACAACAACATAATCGGATCCTCGACGCAAATTATGCAGCATCAACAGCAGCCATTGATGGTTCGTCCCGAGCAACAATGGCCTCCCCAACAAGAGATCACCCGCCCCGACTCAGGAAACGAAGAGATGGAGAGTGAACCAATGGATCGTGATGATAAAGACGACGATGAAGAAGATGAAGAGGAAGAGGACGAAGGTGGAGGGAACTATGAGATTGTGGCAAGCAAACCAGCTTCAGTGAGTGCTGCAGAGTGA 1920 47.08 MLGDSTTSVLGGGAGGGEAAVPETTHHHDGLMGDMEENNNNSGEDERGRSGGGGGDDGDRSFGGNRWPRQETLALLKIRSEMDVAFRDASVKGPLWEQISRKLGELGYHRSAKKCKEKFENVYKYHKRTKEVRSGKPDSKTYKFFEQLEALENHPPLNFHSHLSKPTPPPQPPPPTAVISPIPSSTVPSTTLPHLMNISFSQPNPTIHLPSPPPPPAPLPLNNPTSLPTTVPPSMPFQINVPSAGVGFQSIEADLISNSTSDDINSSTSSDEASRKRRRKRKWKDFFERLMKEVIQKQEEMQKRFLEAIEKREQERVVREEAWRMQEMAKINREREILAQERSMAAAKDAAITSFLQKITESQHNNTNNNASQPSPPPPPPPPSQQQQQPIPTSNPTPVVQPSPRPPPPAAPQASTLQVVVPNSTPQKVGNNNELLQMEIMKMDHNGGENYSISPASSSSRWPKVEVQALIKLRTNLETKYQENGPKGPLWEEISSAMKKLGYNRNAKRCKEKWENINKYFKKVKESRKARPEDSKTCPYFHQLDALYREKSNNTNNNIIGSSTQIMQHQQQPLMVRPEQQWPPQQEITRPDSGNEEMESEPMDRDDKDDDEEDEEEEDEGGGNYEIVASKPASVSAAE 639
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9412698 9415755 + ClCG08G003510.1 Cla08g00363 278018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00363 639 MobiDBLite consensus disorder prediction 1 67 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 22 54 - -
Cla08g00363 639 ProSiteProfiles Myb-like domain profile. 65 123 IPR001005 -
Cla08g00363 639 MobiDBLite consensus disorder prediction 566 591 - -
Cla08g00363 639 Gene3D - 462 523 - -
Cla08g00363 639 Gene3D - 67 128 - -
Cla08g00363 639 CDD GT1 65 130 - -
Cla08g00363 639 CDD GT1 461 525 - -
Cla08g00363 639 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 20 632 - -
Cla08g00363 639 PANTHER - 20 632 - -
Cla08g00363 639 Coils Coil 284 315 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 364 416 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 182 205 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 259 280 - -
Cla08g00363 639 PRINTS Proline rich extensin signature 167 183 - -
Cla08g00363 639 PRINTS Proline rich extensin signature 203 215 - -
Cla08g00363 639 PRINTS Proline rich extensin signature 215 236 - -
Cla08g00363 639 PRINTS Proline rich extensin signature 374 399 - -
Cla08g00363 639 Pfam Myb/SANT-like DNA-binding domain 65 151 IPR044822 -
Cla08g00363 639 Pfam Myb/SANT-like DNA-binding domain 460 547 IPR044822 -
Cla08g00363 639 MobiDBLite consensus disorder prediction 566 639 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 206 231 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 599 623 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 162 181 - -
Cla08g00363 639 ProSiteProfiles Myb-like domain profile. 454 518 IPR001005 -
Cla08g00363 639 SMART sant 63 125 IPR001005 -
Cla08g00363 639 SMART sant 458 520 IPR001005 -
Cla08g00363 639 MobiDBLite consensus disorder prediction 372 413 - -
Cla08g00363 639 MobiDBLite consensus disorder prediction 156 238 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00116 Cla-Chr1:1043610 Cla08g00363 Cla-Chr8:9412698 1.31E-125 dispersed
Cla02g00074 Cla-Chr2:739567 Cla08g00363 Cla-Chr8:9412698 2.08E-21 dispersed
Cla06g00913 Cla-Chr6:15111701 Cla08g00363 Cla-Chr8:9412698 5.46E-07 dispersed
Cla08g00363 Cla-Chr8:9412698 Cla10g01831 Cla-Chr10:34285311 8.71E-22 dispersed
Cla08g00363 Cla-Chr8:9412698 Cla08g00365 Cla-Chr8:9549947 6.67E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61518 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00363 - - csv:101205810 891.338