Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00365 ATGGATGTCGACTCCGGCGAGGCAGTGGTGACAGAGGCGGGGGAAGCTCATGAAGTTGGCAACGGCGACGGCCGTGGCGGCGGCGGTGGAAACGGATCGAATTCCGGCGAAGAAGATAAAGGGTCATCTTTGTTGTTGTTTGAAGATGGTGAGAAGAATTTTGGTGGGAACAGGTGGCCAAGACAAGAGACTTTGGCTTTGTTGAAGATAAGATCTGATATGGATGCAATTTTTAGAGATGCAACTCATAAAGCTCCATTGTGGGATGAAGTTTCAAGGAAATTAGGAGAGCTGGGATTCAATCGAACTCCAAAGAAATGCAAGGAGAAATTTGAGAATGTTTATAAGTATCACAAGAGAACCAAAGATGTTCGAAGTGGGAAATCCGATAACAGCAAAAAAGTTTATAGATTTTCAGATGAATTGGAGGCTTTTGATCACCATAATAGCCATCACCAAAATCACATTTTATTCCAATCTCACCACCACCAGCCGCCGCAGCCGCCACCACCACTGCCGCCAGTTCCTCCGACGACGACAACAACACCACCTCCAGTGATGAAAACAGTCAACTCTACTGTTTCATCCACCATGAACACTACAACAAACAACAACTCTTTGCCACCAAAGTCTTCTAATAACCCTCTTTCCAATTTGCCAAACATGGCTGCCAATGTGATGTTTTCGAGCTCCACTTCATCGTCGACGGCGTCGGAGGAAGATCCGTTTCGGAGTAGCAGGAGGAGGAGGAAGAAGAGGAAGTGGAGTGATTTCTTCTTGAGATTAACAAAGGAGGTAATAGAGAAGCAAGAAGGGCTTCAATTAAAGTTCCTAGAAGCCTTGGAGAGAATAGAGAATCAAAGGAAATTGAGAGATGAAGCATGGAGAATGAAAGAAATGAAAAGGGTTAATCAAGAACATGAAGTTTTAGTTCAAGAGATGTCCATGGCCGCAGCGAAAGATGCAGCCGTCGTCGCATTTTTGCAAAAGATAGCTCCATTTTCGGCTCCGCCACCGCCACCGCCGCCACCACCAATGACAACTCAGTCGCAAAACAACGAGAATAACGGAAAGATGACGTCCGTAATCCCGATGACGAATGGAAAGGTGAGCAGCATTGGAGGAAGCCCTTCAAGATGGCCAAAAGGTGAAGTTGAAGCATTGATAAGACTAAGGACAGAAATGGAAATGAAATATCAAGAGAATGGGCCAAAAGGGTTATTATGGGAGGAGATTTCAGCAGCAATGAGAGGACTTGGATACAATAGAAGCTCAAAGAGATGCAAAGAGAAATGGGAAAATATAAACAAATACTTCAAAAAGGTGAAAGATAGCAACAAGAAGAGAGCAGAAGATTCCAAGACATGTCCTTACTTTCATCAATTAGATGCTCTTTATAGAGAGAAAGAAAAAAATATGAATAATTTTGATATCAATAGCCAAATGGAGCCATTGATGGTTGAACCAGAACAACAATGGCCACCTCCATTTCAAGCCAATAATCAAATCATGGGAAGTTTACAAAGAATAAATGATGAAGGAAATCAAGAAGAAGATGATGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGAGGAAGTAGTAGCACAGATGTGGAAGATTGA 1638 42.74 MDVDSGEAVVTEAGEAHEVGNGDGRGGGGGNGSNSGEEDKGSSLLLFEDGEKNFGGNRWPRQETLALLKIRSDMDAIFRDATHKAPLWDEVSRKLGELGFNRTPKKCKEKFENVYKYHKRTKDVRSGKSDNSKKVYRFSDELEAFDHHNSHHQNHILFQSHHHQPPQPPPPLPPVPPTTTTTPPPVMKTVNSTVSSTMNTTTNNNSLPPKSSNNPLSNLPNMAANVMFSSSTSSSTASEEDPFRSSRRRRKKRKWSDFFLRLTKEVIEKQEGLQLKFLEALERIENQRKLRDEAWRMKEMKRVNQEHEVLVQEMSMAAAKDAAVVAFLQKIAPFSAPPPPPPPPPMTTQSQNNENNGKMTSVIPMTNGKVSSIGGSPSRWPKGEVEALIRLRTEMEMKYQENGPKGLLWEEISAAMRGLGYNRSSKRCKEKWENINKYFKKVKDSNKKRAEDSKTCPYFHQLDALYREKEKNMNNFDINSQMEPLMVEPEQQWPPPFQANNQIMGSLQRINDEGNQEEDDDEEEEEEEEEEEEEDGGSSSTDVED 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9549947 9552190 - ClCG08G003530.1 Cla08g00365 278020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00365 545 MobiDBLite consensus disorder prediction 163 183 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 335 379 - -
Cla08g00365 545 ProSiteProfiles Myb-like domain profile. 51 115 IPR001005 -
Cla08g00365 545 PANTHER - 7 536 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 514 545 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 491 545 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 349 374 - -
Cla08g00365 545 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2 7 536 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 158 252 - -
Cla08g00365 545 CDD GT1 57 122 - -
Cla08g00365 545 Pfam Myb/SANT-like DNA-binding domain 57 138 IPR044822 -
Cla08g00365 545 Pfam Myb/SANT-like DNA-binding domain 378 465 IPR044822 -
Cla08g00365 545 MobiDBLite consensus disorder prediction 494 511 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 184 240 - -
Cla08g00365 545 ProSiteProfiles Myb-like domain profile. 378 436 IPR001005 -
Cla08g00365 545 SMART sant 376 438 IPR001005 -
Cla08g00365 545 SMART sant 55 117 IPR001005 -
Cla08g00365 545 Coils Coil 507 535 - -
Cla08g00365 545 Gene3D - 59 120 - -
Cla08g00365 545 Gene3D - 380 441 - -
Cla08g00365 545 MobiDBLite consensus disorder prediction 1 44 - -
Cla08g00365 545 CDD GT1 378 443 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00365 Cla-Chr8:9549947 Cla10g01831 Cla-Chr10:34285311 1.10E-15 dispersed
Cla08g00363 Cla-Chr8:9412698 Cla08g00365 Cla-Chr8:9549947 6.67E-17 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61519 PF13837 Myb_DNA-bind_4 4.10E-22 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00365 - - csv:101207491 746.503