Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00367 ATGGATCACGCGGCGGATGCTCAGAGGACGGACTTGATGACCATTACACGCTTCGTCTTGAATGAGCAATCCAAGTATCCAGAATCGCGAGGAGATTTCACGATTTTGCTTAGTCATATTGTTCTTGGCTGCAAGTTCGTCTGCTCTGCTGTTAATAAGGCAGGTTTAGCTAAACTTATTGGACTTGCTGGAGAGACCAATGTTCAGGGTGAAGAGCAAAAGAAACTGGATGTGCTCTCAAATGAAGTCTTTATCAAGGCTTTGGTCAGCAGTGGCAGAACTTGTATCCTTGTTTCCGAAGAAGATGAAGAGCCAACATATGTCGAGCCATCTCGCCGTGGAAGGTATTCTGTGGTGTTTGATCCGCTGGATGGATCGTCCAACATTGACTGTGGTGTTTCCATTGGAACGATTTTTGGAATTTATCACTTGAATGACAGCCACGAACCTAACCTAGAAGACGTCTTGCAACCTGGAAAGAATATGGTTGCAGCAGGCTATTGCTTGTATGGCAGCTCTTGCACGTTTGTAGATGGACATTCTAAATTTCTGCTTGTTTTAAGTACTGGAACTGGTGTTAATGGATTCACTCTTGATCCTTCTCTTGGGGAGTTCATTTTAACTCACCCAGACCTTAAGATTCCAAAGAAAGGAAAGATCTATTCAGTGAATGAAGGAAATGCAAAGAACTGGGATGGTCCAACTGCAAAGTATGTTGAGAAGTGCAAGTTTCCTACAGATGGTTCGTCTCCCAAGTCTTTGAGATATGTTGGAAGCATGGTAGCTGATGTCCATCGTACATTGCTTTATGGTGGTATATTTTTGTACCCTGGTGACAAGAAGAGCCCTAATGGGAAATTGCGTGTGTTGTATGAAGTTTTTCCAATGGCATTCTTGATAGAGGAGGCAGGAGGTCAAGCGTTCACCGGAAAAATAAGGGCACTTGACTTGGTTCCAAAGAAGATACATGAGAGATCTCCCATATTTCTTGGTAGCTATGATGATGTTGAAGAGATCAAAGCTTTGTATGCTGCTGCTGAGAAGGAATGA 1050 43.24 MDHAADAQRTDLMTITRFVLNEQSKYPESRGDFTILLSHIVLGCKFVCSAVNKAGLAKLIGLAGETNVQGEEQKKLDVLSNEVFIKALVSSGRTCILVSEEDEEPTYVEPSRRGRYSVVFDPLDGSSNIDCGVSIGTIFGIYHLNDSHEPNLEDVLQPGKNMVAAGYCLYGSSCTFVDGHSKFLLVLSTGTGVNGFTLDPSLGEFILTHPDLKIPKKGKIYSVNEGNAKNWDGPTAKYVEKCKFPTDGSSPKSLRYVGSMVADVHRTLLYGGIFLYPGDKKSPNGKLRVLYEVFPMAFLIEEAGGQAFTGKIRALDLVPKKIHERSPIFLGSYDDVEEIKALYAAAEKE 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9611535 9615817 - ClCG08G003550.1 Cla08g00367 278022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00367 349 Pfam Fructose-1-6-bisphosphatase, C-terminal domain 214 343 IPR044015 -
Cla08g00367 349 Gene3D - 213 349 - -
Cla08g00367 349 ProSitePatterns Fructose-1-6-bisphosphatase active site. 285 297 IPR020548 GO:0005975|GO:0042578
Cla08g00367 349 SUPERFAMILY Carbohydrate phosphatase 8 343 - -
Cla08g00367 349 CDD FBPase 20 343 IPR000146 GO:0005975|GO:0016791
Cla08g00367 349 Pfam Fructose-1-6-bisphosphatase, N-terminal domain 13 210 IPR033391 -
Cla08g00367 349 Gene3D - 4 212 - -
Cla08g00367 349 PIRSF FBPtase_SBPase 9 349 IPR000146 GO:0005975|GO:0016791
Cla08g00367 349 PRINTS Fructose-1,6-bisphosphatase signature 195 218 IPR028343 GO:0042132
Cla08g00367 349 PRINTS Fructose-1,6-bisphosphatase signature 38 65 IPR028343 GO:0042132
Cla08g00367 349 PRINTS Fructose-1,6-bisphosphatase signature 75 101 IPR028343 GO:0042132
Cla08g00367 349 PRINTS Fructose-1,6-bisphosphatase signature 319 344 IPR028343 GO:0042132
Cla08g00367 349 PRINTS Fructose-1,6-bisphosphatase signature 221 248 IPR028343 GO:0042132
Cla08g00367 349 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE, CYTOSOLIC-LIKE 2 349 - -
Cla08g00367 349 PIRSF FBPtase 9 348 IPR028343 GO:0042132
Cla08g00367 349 PANTHER FRUCTOSE-1,6-BISPHOSPHATASE-RELATED 2 349 IPR000146 GO:0005975|GO:0016791
Cla08g00367 349 Hamap Fructose-1,6-bisphosphatase class 1 [fbp]. 13 345 IPR000146 GO:0005975|GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00367 K03841 FBP, fbp; fructose-1,6-bisphosphatase I [EC:3.1.3.11] - csv:101205576 660.218
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00371 Cla-Chr7:4440118 Cla08g00367 Cla-Chr8:9611535 1.63E-22 dispersed
Cla08g00367 Cla-Chr8:9611535 Cla09g01582 Cla-Chr9:31579753 2.81E-66 dispersed
Cla08g00367 Cla-Chr8:9611535 Cla04g00733 Cla-Chr4:22340006 1.94E-101 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1386 Blo01g01724 . . . . . . Bma01g02503 . . . . Car01g00893 . . Cpe06g00880 . . . . . . . . Cla08g00367 Cam08g0791 Cec08g0351 Cco08g0459 Clacu08g0504 . Cre08g0333 . . . Cone20ag0383 . . . . . . Bda11g00878 . . . . . . Cmo01g01050 . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008203 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 0 1 1 1 1 3 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00367 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0