Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00382 ATGAGAGCCATTGGAAAATTCGTCGCTCTTCCTTTCTTCTCAGGTTGTGCTTCTCGTTCTAGTGTCGCTACGAGCACATCCATTTCTACGACTCAAATCCGAGAGCTTAAAGAAGTAAACCCAAGTGTAGCAAGAAGAGAAGAAAGTGAAAATAAAACTTCTGAAGTGAAAATGAAAAACCCTTCTGGTTTCTTATTTGTTCTGCCTAATATAACAAATGGAGTTCATAAGTTGGTCAGAAGCCTCAAAACTTTCTCCCAATTATTTGTTTTGAGAAAGGATGAAGAAGTAGAGGAAGTGGAAATGGAGATTGGATATCCAACAGATGTGAAGCATGTGACACATATTGGATTGGATGGCTCTACAACTACAAACCCTAATATTAAGGGTAATCATTGGGAAAATCTCAATAACTTTGTTCCTTCTGAGTTTCTTAATTCTTTTCCTTCCATTTCTTTAAGGCAATTTGAACTTTCAATGGCTGCTCAAGCACAATCTTCTCTTCTAGCAACATGA 516 37.4 MRAIGKFVALPFFSGCASRSSVATSTSISTTQIRELKEVNPSVARREESENKTSEVKMKNPSGFLFVLPNITNGVHKLVRSLKTFSQLFVLRKDEEVEEVEMEIGYPTDVKHVTHIGLDGSTTTNPNIKGNHWENLNNFVPSEFLNSFPSISLRQFELSMAAQAQSSLLAT 171
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10163287 10168760 - ClCG08G003690.2 Cla08g00382 278037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00382 171 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC2 3 166 IPR044509 -
Cla08g00382 171 Pfam P21-Rho-binding domain 103 123 IPR000095 -
Cla08g00382 171 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC4-LIKE 3 166 - -
Cla08g00382 171 ProSiteProfiles CRIB domain profile. 104 117 IPR000095 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00382 - - - csv:105435748 254.603
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01032 Cla-Chr3:19777577 Cla08g00382 Cla-Chr8:10163287 1.36E-18 dispersed
Cla08g00382 Cla-Chr8:10163287 Cla06g00139 Cla-Chr6:1598038 9.90E-07 dispersed
Cla08g00382 Cla-Chr8:10163287 Cla03g00461 Cla-Chr3:5195043 6.31E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1087 . . Bda03g01082 . . . Bma04g00996 . . . . . . . . . . . . . . . . . Cla08g00382 Cam08g0802 Cec08g0372 Cco08g0472 Clacu08g0515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013937 1 1 0 1 0 1 0 0 1 1 1 1 1 1 1 1 1 2 0 0 1 1 1 0 1 0 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00382 Cla_Chr08 FPKM 2.704201 2.875106 2.891563 1.632307 3.05698 3.823492 4.732749 1.620933 1.388885 1.666166