Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00390 ATGGATCTTCCTAGCCTGGCTGTTGTTCTTCAAGCTGCTCTCAGCCCCAATCCCGATGAGAGGAAGGCTGCTGAGCAGAGTCTCAATCAGATTCAGCATACCCCGCAACATCTGGTGAGGATGCTACAGATCATTGTGGACAATAATTGTGACTTGGCTGTTCGTCAGGTTGCCAGCATTCATTTTAAGAATTACATTGCTAAGAACTGGTCCCCCGTTGACCCAGATGAACCTCAGAAGATTTCTGAGAGTGACAAAGATGCGGTCCGGAAGAATATTCTTCCATTCTTGTCCCAGGTTCCATCGTTGTTGAGGGTACAGCTTGGGGAGTGCTTAAAGACTATCATTCATGCTGATTATCCGGAGCAATGGCCGTGTCTTCTTGAATGGGTGAAAGAAAATTTACAAGCTTCAAACGTTTATGGGGCTTTATTTGTGTTGCGAATTCTTGCTAGAAAATATGAGTTTAAATCAGATGAGGACAGGACTCCTGTTTATCGAATTGTTGATGAGACATTCCCTCTTCTACTCAATATATTTAGCAGACTCGTTCAGATTGGTAACCCTTCTTTGGAAGTAGCGGAGTTGATCAAGTTTATTTGTAAAATATTTTGGTCATCGATATATATGGAGATTCCAAAGCATCTTTTCGATACACATGTGTTCAATGCTTGGATGATGCTATTCTTAAATATACTGGAGAGGCCAGTCCCCTTGGAAGGCCAGCCTGCAGATCCTGAACTTAGGAAATCCTGGGGGTGGTGGAAAGTGAAGAAGTGGACTGTCCATATTTTAAATAGGCTTTACACCCGGTTTGGAGATTTGAAACTTAAGAATCCAGAAAGTAGAGCCTTTGCTCAAGCATTTCAGAAGAACTATGCAGGGAAAGTCATGGAATGCCACTTAAATTTGTTGAATGTGATACGCAGTGGTGGCTATTTGCCAGATCGAGTTACCAATCTCATTCTTCAATATCTAAGCAATAGTCTGCTTTTTGAGATAATTTTCCCCCTTATGTGCTTCAATGACAATGATCAGAAGCTTTGGGATGAGGATCCCCATGAATATGTCAGGAAGGGTTATGATATCATTGAGGATTTATATAGTCCAAGGACTGCCTCTATGGATTTTGTCAGTGAGCTGGTTAGGAAGCGTGGGAAAGAAAACCTTCAAAAATTTATCCAATTCATCGTTGGAATTTTCAATAGGTATGACGAAGCAGCTATTGAATTTAAGCCCTATAGACAGAAAGATGGGGCTCTTCTTGCTATTGGAGCACTCTGTGACAAATTGAAACAAACAGAACCCTACAAATCTGAACTTGAGCGCATGTTAGTTCAACATGTTTTTCCTGAATTCAGCAGTCCTGTTGGGCATCTCAGAGCCAAGGCAGCATGGGTTGCTGGACAGTATGCCCACATCAATTTTGCTGACCAGAACAATTTCCGAAAAGCCTTGCATAGTGTTGTTGCTGGGATGCGAGACCCAGAACTCCCTGTTCATTTGAATGAAATCCGTCCAATCCTTCCACAACTTCTTGATGAATTTTTTAAACTTATGAATGAGGTTGAAAATGAAGACCTTGTATTTACTCTGGAGACAATAGTTGATAAGTTTGGGGAGGAAATGGCTCCTTATGCGCTTGGATTATGTCACAATTTGGCTGCGGCTTTCTGGAGGTGTATGAATACTGCAGAAGCAGATGAAGAAGCTGATGATCCTGGTGCTCTGGCTGCAGTGGGTTGTTTGCGTGCAATTAGCACAATTCTTGAATCAGTGAGCAGAATTCCTCAACTTTTTGTCCAAATTGAGCCAACATTGCTCCCAATAATGCGAAGAATGTTGACAACTGACGGCCAAGAGGTGTTTGAAGAAGTCTTGGAAATTGTTTCATTTATGACGTTCTTCTCCCCTACAATATCTATGGATATGTGGAGTCTTTGGCCACTGATGATGGAAGCATTGGCAGAATGGGCTATTGATTTTTTTCCAATGGTCTGGTCGCCTTGCATGCTCCTGATTGATGAAGCCTATGAAGATGGAGAGAATGAAGAGCAAATGTGTAGCTTATTGCCATTGGAACAACATAACTTGGTTGGAGTCTGCAATTTCATTGTCAGGCATGTTCACATTTTTATGACAGTCATTTCTGATATACTTGTTCCATTGGACAATTACGTATCCAGAGGGACTGCGCATTTCCTCAGCTCCAAGGCACCTGATTACCAGCAAAGTCTTTGGAACATGATTTCCTCAATAATGGCTGACAAGAATTTGGAAGATGGTGACATTGAGCCAGCTCCAAAGCTTATTCAAGTTGTCTTTCAAAACTGCAAAGGTCAAGTGGATCAATGGATTGAACCGTATCTCAGAATCACAATAGAACGCCTACAACGAACTGAGAAGTCATACTTGAAATGTCTTCTAATGCAAGTGATTTCTGATGCCCTTTACTATAATGCCTCATTATCACTCAGCATATTGCAAAAGCTAGGTGTTGCAGCAAATGTATTCGATCTTTGGTTCCAGATGCTTCAACAGGTTAAAAAGAGTGGTGTCCGAGCTAATTTTAGAAGGGAACAAGATAAAAAAGTTTGCTGCTTAGGGTTGACCTCTTTGCTTGCACTTCCAGCTGATCAATTACCGGGGGAGGCTCTTGGGCGTGTTTTTAGGGCCACCCTTGATCTCCTAGTTGCTTACAAGGATCAAGTTGCAGGTCTTTTTTGCACTCCCTCTCTCTTTATTTGTACCTATAGTTCCAGGCTAAATCCTCATATATATTCTGCTCATTTGCACACAGAAGCTGCAAAAGATGAGGAAGTTGAAGAAGATGATGAAATGGATGGTTACCCAAGCGATGAAGATGACGACGAGGGAGATGGTTCTGACAAGGAAATGGGATTTGATGCTGAGGATGGTGATGAAGTTGACAGCATCAAGCTTCAAAAGCTGGCTGCACAGGCCAAATCTTTCCGCCCAGATGATGATGATGATTTTGACTCGGATGATGATTATAGTGATGATGAGGAGATGCAGTCTCCTTTAGATGATGTGGACCCTTTTATTTACTTTGTAGATACAATCAAAGCTATGCAAGGATTAGATCCAATGAGGTTTCAGAGTCTTACCCAATCATTAGAGTTCCAATATCAAGCTCTTGCGCATGGTGTTGCGCAGCATGCTGAACAGCGGAGAGTAGAAATTGAGAAGGAGAAGCTGGAAAGGGCAGCCTCAGCCGCCTCTTCGTGA 3249 42.2 MDLPSLAVVLQAALSPNPDERKAAEQSLNQIQHTPQHLVRMLQIIVDNNCDLAVRQVASIHFKNYIAKNWSPVDPDEPQKISESDKDAVRKNILPFLSQVPSLLRVQLGECLKTIIHADYPEQWPCLLEWVKENLQASNVYGALFVLRILARKYEFKSDEDRTPVYRIVDETFPLLLNIFSRLVQIGNPSLEVAELIKFICKIFWSSIYMEIPKHLFDTHVFNAWMMLFLNILERPVPLEGQPADPELRKSWGWWKVKKWTVHILNRLYTRFGDLKLKNPESRAFAQAFQKNYAGKVMECHLNLLNVIRSGGYLPDRVTNLILQYLSNSLLFEIIFPLMCFNDNDQKLWDEDPHEYVRKGYDIIEDLYSPRTASMDFVSELVRKRGKENLQKFIQFIVGIFNRYDEAAIEFKPYRQKDGALLAIGALCDKLKQTEPYKSELERMLVQHVFPEFSSPVGHLRAKAAWVAGQYAHINFADQNNFRKALHSVVAGMRDPELPVHLNEIRPILPQLLDEFFKLMNEVENEDLVFTLETIVDKFGEEMAPYALGLCHNLAAAFWRCMNTAEADEEADDPGALAAVGCLRAISTILESVSRIPQLFVQIEPTLLPIMRRMLTTDGQEVFEEVLEIVSFMTFFSPTISMDMWSLWPLMMEALAEWAIDFFPMVWSPCMLLIDEAYEDGENEEQMCSLLPLEQHNLVGVCNFIVRHVHIFMTVISDILVPLDNYVSRGTAHFLSSKAPDYQQSLWNMISSIMADKNLEDGDIEPAPKLIQVVFQNCKGQVDQWIEPYLRITIERLQRTEKSYLKCLLMQVISDALYYNASLSLSILQKLGVAANVFDLWFQMLQQVKKSGVRANFRREQDKKVCCLGLTSLLALPADQLPGEALGRVFRATLDLLVAYKDQVAGLFCTPSLFICTYSSRLNPHIYSAHLHTEAAKDEEVEEDDEMDGYPSDEDDDEGDGSDKEMGFDAEDGDEVDSIKLQKLAAQAKSFRPDDDDDFDSDDDYSDDEEMQSPLDDVDPFIYFVDTIKAMQGLDPMRFQSLTQSLEFQYQALAHGVAQHAEQRRVEIEKEKLERAASAASS 1082
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 10397876 10409979 + ClCG08G003770.2 Cla08g00390 278045

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00390 1082 MobiDBLite consensus disorder prediction 938 972 - -
Cla08g00390 1082 MobiDBLite consensus disorder prediction 934 975 - -
Cla08g00390 1082 MobiDBLite consensus disorder prediction 987 1016 - -
Cla08g00390 1082 PANTHER IMPORTIN-7, 8, 11 1 669 - -
Cla08g00390 1082 Pfam Cse1 329 434 IPR013713 GO:0006886
Cla08g00390 1082 Pfam Importin-beta N-terminal domain 24 98 IPR001494 GO:0006886|GO:0031267
Cla08g00390 1082 PANTHER IMPORTIN-7, 8, 11 714 1070 - -
Cla08g00390 1082 SMART IBN_N_2 24 99 IPR001494 GO:0006886|GO:0031267
Cla08g00390 1082 MobiDBLite consensus disorder prediction 996 1015 - -
Cla08g00390 1082 ProSiteProfiles Importin-beta N-terminal domain profile. 24 99 IPR001494 GO:0006886|GO:0031267
Cla08g00390 1082 Gene3D - 1 1046 IPR011989 -
Cla08g00390 1082 PANTHER IMPORTIN-7-LIKE PROTEIN-RELATED 1 669 - -
Cla08g00390 1082 PANTHER IMPORTIN-7-LIKE PROTEIN-RELATED 714 1070 - -
Cla08g00390 1082 SUPERFAMILY ARM repeat 1 1053 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00390 K20223 IPO7, RANBP7; importin-7 - csv:101206810 1830.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00087 Cla-Chr5:835040 Cla08g00390 Cla-Chr8:10397876 1.69E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1095 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00390 Cam08g0809 Cec08g0380 Cco08g0478 Clacu08g0521 . Cre08g0349 . . Cone18ag0868 Cone11ag0640 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004088 2 2 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 4 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00390 Cla_Chr08 FPKM 10.925994 8.995114 10.398664 11.524075 16.257042 16.830246 16.274347 15.927572 14.669251 16.469137