Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00416 ATGGCCTATGAATTGACTGAGCAAAAAAAAGTTGGACTTGGGCTGATTGGTTTTGGCTTCTTTTTCACATTTTTGGGTGTAATCCTTTTCTTTGACAGGGGATTGCTTGCTTTAGGAAATATATTTTGGTTAATTGGGGTGACACTTTTACTTGGTTGGCATTCTACGTGGAATCTATTTACCAGCCGAGCAAATTACAAGGGTTCTGCATCCTTTCTTCTTGGCCTCTTCTTCATTTTTGTTCGCTGGCCCATAATTGGCATACTCTTGGAGATTTGTGGCTGTTTTGTTCTCTTTGGTGGTTTCTGGCCCTCAATTAAAGGATTCTTGTACCAGATTCCAGTTCTTGGATGGTTTCTTCCATACCCCATCATGATTCTCGAAAGTCTGTGGAGAGGCTCTGGTTGA 408 41.42 MAYELTEQKKVGLGLIGFGFFFTFLGVILFFDRGLLALGNIFWLIGVTLLLGWHSTWNLFTSRANYKGSASFLLGLFFIFVRWPIIGILLEICGCFVLFGGFWPSIKGFLYQIPVLGWFLPYPIMILESLWRGSG 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12704090 12710627 + ClCG08G004020.1 Cla08g00416 278071

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00416 135 PANTHER CGI-141-RELATED/LIPASE CONTAINING PROTEIN 1 131 IPR045176 GO:0006888|GO:0042147
Cla08g00416 135 PANTHER GOT1/SFT2-LIKE VESCICLE TRANSPORT PROTEIN FAMILY 1 131 - -
Cla08g00416 135 Pfam Got1/Sft2-like family 15 114 IPR007305 GO:0016192
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00416 - - - csv:101206029 251.906
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla07g01507 Cla08g00416 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01507 Cla-Chr7:32300077 Cla08g00416 Cla-Chr8:12704090 5.09E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1125 . . . . . . . . . Cmo17g00564 . . . . . . . . . . . . . . Cla08g00416 Cam08g0855 Cec08g0431 Cco08g0541 Clacu08g0567 . Cre08g0391 . . . . . . . . . . . . . . . . . . . . Cma17g00580 . Car17g00538 Cpe12g00494 . . . . . . . . Cla07g01507 Cam07g1604 Cec07g1700 Cco07g1663 Clacu07g1594 Cmu07g1559 Cre07g1936 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011775 1 1 0 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00416 Cla_Chr08 FPKM 28.97183 32.844025 21.098967 22.56492 33.525665 19.996984 34.316254 45.075512 43.106174 61.005749