Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00440 ATGAGCAGAAGGGGGCTGAAATCTCTCCAATTTCTCTCAGCCTCCTTCATTTCTTCTCCAATTAAATCCAAGGCCATCTTCTCTTCAAACCCATTTCCGTCATACTCCCATTCTTCTATACTTGCCCACGCTTTCATCCGTGTATATCGCCAATCGCTTTCCTCCCCCATTTTCCACTACTCCACTTCTTCTCCGGACGATCTCGAAGGATTGGTTGATCCGGTCGAGTCGCTTTCCTCTGACACTTCGCGGGTCCAATGCTTTTCCCCCAAAGAAGTCTCGCTTCTGCGTGATTTGTTGTTGGATTCTCATGCTGACTCTGGTTCTTCAGAGCAGAAGCTCCAGACTGGTAAGATTTCAAACGAAGCCATTTCGATATTAGATGCAATTCGAAATTGTGATGATGGGTTCGGGGACAAAACCCATATATTACTTAGGCAGTTCAGGCATAAGTTGAATCCAGATTTGGTGGTTGAGATTTTGAGTCTTTTGAGAAGTCCTGAATTGTGTGTCAAGTTCTTTCTATGGGCGGGTCGACAAGTTGGTTACAGTCATACTACGTCTGTGTACAATGCGTTGTTAGATGTTTACGAGCGTGGTAGTTATGATCGAGTACCCGAGCAGTTTCTTCAGGAAATTAAGGGTGATGACAAAGAGGTGCTTGGGAAGCTGCTTAATGTATTGATTAGAAAGTGTTGCCGAAATGGGTTGTGGAATGTAGCATTGGAAGAGCTCGGGAGGCTTAAGGACTTTGGGTACAAGCCTACCCGATTAACTTATAATGCTTTAGTTCAAGTCTTTCTCAGGGCGGATAAGTTAGACACTGCTCATTTGGTTCATAGAGAAATGTCAGAATTAGGATTTAGTATGGATGAGTTTACTCTTGGTTTATTTGCTCAAGCTCTCTGCAAAGTGGGCAAATGGAGAGAGGCCCTCTCATTAATTGAGGAAGAAGATTTTGTTCCTAATACGATTCTTTATAATAAGATGATATCTGGACTGTGTGAATCTTCATTTTTTGAAGAAGCAATGGATTTTTTGAACAGGATGCGGTCTAGTTCTTGCATCCCTAATGTTCAGACTTATAAGATATTGCTTTGTGGCTGTTTGAATAAAAAACAGTTGGGTCGATGTAAGAGAATTCTAAGCATGATGATTGCAGAAGGCTGTTTTCTGAGTTGTACGATGTTTAATTCTCTTGTACATGCTTATTGCAAATCAGGGGACTTTTCATATGCTTATAAGTTGCTTAAGAAAATGGAAAAATGTGAATGCAAACCTGGCTATGTGGTTTACAATATCTTAATTGGCAGTATTTGTAGCAATGAAGAACTACCTGGGCCAGTTACATTTGAGTTGGCTGAGAAAGCTTACAATGAGATGCTTTCTGCCGGAACTGTTCTAAATAAGGTCAACGTTGTAAGCTTTGCTCGATGCCTTTGTGGCTATGGGAAATTTGAGAAAGCTTATAAAGTAATTCATGAAATGATGGGTAATGGTTTCGTTCCTGATACTTCTACATATTCTGAAGTGATAGGTTTTCTATGTAATGCATCCAGGGTAGAAAATGCCTTTCTGCTTTTTAAAGAAATGAAAAGGAATGGTGTGGTTCCTGATGTTTATACATACACAATTTTAATTGATTGTTTTTCTAAAGTTGGCCTCATCAAACAAGCTCACAATTGGCTAGATGAAATGGTAAGAGATGGCTGTGAACCTACTGTGGTGACTTATACAACCCTCATCCATGCATATCTTAAGGCTAAGAAAGTTTCTGTTGCTAATGAACTTTTTGAGTTAATGATAGCCAAGGGTTGTTTTCCTAATGTAATTACATATACAGCTTTAATTGATGGCTATTGTAAATCAGGGAATATAGAAAAAGCTTGCCAGATTTATGCAAGAATGAGAGGTGATGCAGACATTGGTGATGTAGATATGTATTTTAAAATAGAAAATAATGTGGCTGAAAAGCCAAATGTTGTTACATATGGAGCTTTAGTGGATGGTTTATGCAAGGCCCATAAAGTCAAAGATGCCCGTGACTTGTTGGAGACCATGTTTGTGGAAGGCTGTGAACCAAACAACGTTGTATATGATGCACTTATTGATGGATTTTGTAAGGCTGCAAAATTGGATGAAGCACAAGAGGTCTTTCTTAAGATGGTAGAGCGTGGGTATAATCCCAATGTCTATACTTATAGCTCTCTTATTGATAGACTATTCAAGGATAAACGTCTAGATCTTGTTTTGAAAGTGTTGTCCAAAATGTTAGAGGATTCTTGTCCTCCTAACGTTGTTATCTACACAGAGATGATTGATGGCCTTTCTAAAGTGGCAAGGACAGATGAAGCTTATAAGCTTATGTTGATGATGGAAGAGAAGGGATGTAAACCAAATGTTGTGACCTACACTGCAATGATTGATGGCTTTGGGAAAGCTGGTAAAGTCGACAAATGCCTTGAGCTTTTCAGGGAAATGGGGTCAAAAGGTTGTGCTCCAAATTTTGTTACCTACACGGTGTTGATCAACCATTGCTGTGCTTCTGGCTGTTTAGACGAGGCTTATGCACTTTTGGTAGAAATGAAACAAACGTATTGGCCAAAATATGTCTCGAGCTACTGTAAGGTCATTGAAGGCTATAAACGGGAGTTCATTCTCTCTCTTGGGCTTTTAGAGGAAGTGGAGAAGAATGATTGTGCTCCAATTATTATGCTATATAGGGTTTTGATTGATAACTTTGTTAAGGCAGGAAGACTGGAAGTGGCACTGGAGCTCCACAAAGAGGTCATATCAGCTTCAATGTCCATGGCTGCTAAGAGAAATATGTATACAACTTTGATTTACAGCTTTTCTAATGCAACTAAGATTGGTCAGGCGTTTGAGTTATTCTATAATATGATAAGAGAGGGTGTTATACCAGATCTTGGTACACTTGTCCACCTTATTATGGGGCTTATCAGAGTTAGCAGGTGGGAAGAAGCACTTCAGCTGTCAGATAGCATATGTCAAATGGTATGTGTCTTGACCCCTCTGATTTCTAATCTTTCAGTCAGTTGTATAAATCTCCAACATCTGCTTATTTTGGAAGAATGGCTAAAGAACTCGTTGTCAGTATACAAAAGTTTTTTCATCTTAGACATGATTACTGTTAGCCTCACCAGGATTGTAACTGCGCCAGGATTATACTTGTGTCATGAGTCATGGCCATGTCAGTATGCTAATTTTTATTCTTTACCATTCTTGACCCCCCGCCCTCTCTCTTCTCTCTTCAGATTATTCAGAGGAAACTGCAGGTCTGAACTGCCAACAGGATGA 3318 39.66 MSRRGLKSLQFLSASFISSPIKSKAIFSSNPFPSYSHSSILAHAFIRVYRQSLSSPIFHYSTSSPDDLEGLVDPVESLSSDTSRVQCFSPKEVSLLRDLLLDSHADSGSSEQKLQTGKISNEAISILDAIRNCDDGFGDKTHILLRQFRHKLNPDLVVEILSLLRSPELCVKFFLWAGRQVGYSHTTSVYNALLDVYERGSYDRVPEQFLQEIKGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRLTYNALVQVFLRADKLDTAHLVHREMSELGFSMDEFTLGLFAQALCKVGKWREALSLIEEEDFVPNTILYNKMISGLCESSFFEEAMDFLNRMRSSSCIPNVQTYKILLCGCLNKKQLGRCKRILSMMIAEGCFLSCTMFNSLVHAYCKSGDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSNEELPGPVTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGYGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFLLFKEMKRNGVVPDVYTYTILIDCFSKVGLIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIGDVDMYFKIENNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVEGCEPNNVVYDALIDGFCKAAKLDEAQEVFLKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLEDSCPPNVVIYTEMIDGLSKVARTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCASGCLDEAYALLVEMKQTYWPKYVSSYCKVIEGYKREFILSLGLLEEVEKNDCAPIIMLYRVLIDNFVKAGRLEVALELHKEVISASMSMAAKRNMYTTLIYSFSNATKIGQAFELFYNMIREGVIPDLGTLVHLIMGLIRVSRWEEALQLSDSICQMVCVLTPLISNLSVSCINLQHLLILEEWLKNSLSVYKSFFILDMITVSLTRIVTAPGLYLCHESWPCQYANFYSLPFLTPRPLSSLFRLFRGNCRSELPTG 1105
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13458074 13464054 + ClCG08G004220.2 Cla08g00440 278095

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 497 567 IPR011990 GO:0005515
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 568 639 IPR011990 GO:0005515
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 658 687 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 469 503 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 574 608 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 800 834 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Cla08g00440 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 872 1008 - -
Cla08g00440 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 95 873 - -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 541 575 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 576 610 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 697 731 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 326 359 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 396 427 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 478 505 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 837 863 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 507 540 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 611 637 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 662 695 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 802 835 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 732 766 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 943 975 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 767 801 IPR002885 -
Cla08g00440 1105 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat family 694 742 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat family 799 847 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat family 511 552 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat family 322 369 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat family 573 622 IPR002885 -
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 375 496 IPR011990 GO:0005515
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 160 316 IPR011990 GO:0005515
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 609 639 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 730 764 IPR002885 -
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 744 884 IPR011990 GO:0005515
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 885 1026 IPR011990 GO:0005515
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 539 573 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 835 869 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 940 974 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 660 694 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 300 317 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 767 797 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 478 501 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 907 932 IPR002885 -
Cla08g00440 1105 Pfam PPR repeat 943 972 IPR002885 -
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 640 743 IPR011990 GO:0005515
Cla08g00440 1105 Gene3D Tetratricopeptide repeat domain 317 374 IPR011990 GO:0005515
Cla08g00440 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 872 1008 - -
Cla08g00440 1105 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 95 873 - -
Cla08g00440 1105 SUPERFAMILY HCP-like 361 635 - -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 695 729 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 765 799 IPR002885 -
Cla08g00440 1105 Pfam Pentatricopeptide repeat domain 380 439 IPR002885 -
Cla08g00440 1105 Pfam Pentatricopeptide repeat domain 225 267 IPR002885 -
Cla08g00440 1105 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00440 - - - csv:101206518 1783.46
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00440 Cla-Chr8:13458074 Cla02g01383 Cla-Chr2:28248026 3.84E-25 dispersed
Cla11g00899 Cla-Chr11:15332441 Cla08g00440 Cla-Chr8:13458074 8.94E-25 transposed
Cla01g01376 Cla-Chr1:27950160 Cla08g00440 Cla-Chr8:13458074 2.95E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1146 . . . . . . . . . Cmo17g00570 . . . . . . . . . . . . . . Cla08g00440 Cam08g0873 Cec08g0452 Cco08g0574 Clacu08g0589 . Cre08g0412 . . . . . . . . . . . . . . . . . . . . Cma17g00588 . Car17g00544 Cpe12g00501 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009746 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00440 Cla_Chr08 FPKM 6.595238 6.018532 29.529081 34.483425 3.552913 3.807584 1.359736 0.875516 1.852545 0.925468