Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00450 ATGTTATTTTCTCGATCCTTTTTCCGGTCCCAGCTCAAACCCTCCCACATTTCCCGCTATTCTCCAGGTTTTTCTTCCCCGTTTTCCTCTCTTTCACCTTCTTCCGCAGCCTCAATTGAAGCCGAGAGGCTTCTCAGAGATGGGCCCAGGAATAATTGGACCCGACAAGAGATTCGGGACATTTACGACTCTCCCGTGCTCGATCTGCTTTTCCATGGCGTCAGTACTCTCTCTCTCTCTCTCTCTCTCTCGCACGCTCTCTCTGCGCAAGTTCATAGGCACACACACAATTTCCGGGAGGTGCAGCAGTGTACTCTCCTTTCAATCAAAACAGGTGGGTGTAGTGAGGATTGTTCCTACTGTCCTCAATCATCGAGATATGACACTGGAGTGAAAGCTCAAAAACTTATGACCAAGGATGTCGTCCTGGAGGCAGCCAAAAAGGCAAAAGAGGCTGGTAGCACAAGATTTTGTATGGGTGCTGCATGGAGAGACACAATAGGAAGAAAAACTAATTTCAATCAGATCCTTGATTATGTAAAAGAAATAAGAGAGATGGGGATGGAGGTCTGCTGCACCCTGGGCATGATAGAGAAGCAACAAGCTATTGACCTCAAAAAGGCAGGCCTAACAGCTTATAACCACAACCTAGATACGTCAAGGGAATACTACCCAAACATTATAACCACGAGGAGTTATGATGAGCGTTTGAAAACCCTAGAATTTGTTCGTGATGCTGGAATCAATGTCTGCTCAGGAGGAATAATTGGGCTTGGAGAGGCAGAAGAGGACCGTGTCGGTTTGCTGCATACCTTGGCAACGCTGCCTACACATCCTGAGAGTGTTCCCATCAACGCACTGGTTGCAGTGAAAGGAACCCCTCTTCAAGATCAAAAACCTGTTGAAATTTGGGAGATGATTCGAATGATCGCTACAGCACGTATCACGATGCCGAAAGCGATGGTAAGGTTGTCAGCAGGTAGAGTGAAGTTCTCAGTGCCCGAGCAGGCGTTATGCTTCCTTGCGGGAGCAAATTCTATCTTCACCGGGGAAAAACTGCTAACGACGCCAAATAATGATTTTGATGCTGATCAACTCATGTTCAAGATGCTGGGTCTGATTCCAAAAGCTCCCAGTTTCACTGAAGATGTTGAGAAAGCCCCTGAAGAAGAGTCATTACAAGAAGCTGCTTCCAGTTCGTAA 1203 46.8 MLFSRSFFRSQLKPSHISRYSPGFSSPFSSLSPSSAASIEAERLLRDGPRNNWTRQEIRDIYDSPVLDLLFHGVSTLSLSLSLSHALSAQVHRHTHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKAQKLMTKDVVLEAAKKAKEAGSTRFCMGAAWRDTIGRKTNFNQILDYVKEIREMGMEVCCTLGMIEKQQAIDLKKAGLTAYNHNLDTSREYYPNIITTRSYDERLKTLEFVRDAGINVCSGGIIGLGEAEEDRVGLLHTLATLPTHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARITMPKAMVRLSAGRVKFSVPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKMLGLIPKAPSFTEDVEKAPEEESLQEAASSS 400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13722440 13727580 + ClCG08G004320.2 Cla08g00450 278105

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00450 400 PANTHER BIOTIN SYNTHASE 32 392 IPR002684 GO:0004076|GO:0009102
Cla08g00450 400 TIGRFAM bioB: biotin synthase 88 373 IPR002684 GO:0004076|GO:0009102
Cla08g00450 400 SFLD biotin synthase 49 380 IPR024177 -
Cla08g00450 400 SMART MiaB 104 312 IPR006638 GO:0003824|GO:0051536
Cla08g00450 400 SMART BATS_2 283 375 IPR010722 -
Cla08g00450 400 SUPERFAMILY Radical SAM enzymes 51 376 - -
Cla08g00450 400 Pfam Radical SAM superfamily 111 269 IPR007197 GO:0003824|GO:0051536
Cla08g00450 400 SFLD Radical SAM 49 380 IPR007197 GO:0003824|GO:0051536
Cla08g00450 400 Gene3D Aldolase class I 50 377 IPR013785 -
Cla08g00450 400 MobiDBLite consensus disorder prediction 381 400 - -
Cla08g00450 400 Pfam Biotin and Thiamin Synthesis associated domain 283 373 IPR010722 -
Cla08g00450 400 ProSiteProfiles Radical SAM core domain profile. 99 328 IPR007197 GO:0003824|GO:0051536
Cla08g00450 400 CDD Radical_SAM 111 311 - -
Cla08g00450 400 PIRSF Biotin_synth 35 382 IPR024177 -
Cla08g00450 400 Hamap Biotin synthase [bioB]. 51 376 IPR002684 GO:0004076|GO:0009102
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00450 K01012 bioB; biotin synthase [EC:2.8.1.6] - csv:101222084 677.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1189 . . . . . . . . . Cmo17g00574 . . . . . . . . . . . . . . Cla08g00450 Cam08g0879 Cec08g0460 Cco08g0582 Clacu08g0597 . Cre08g0419 Cone14ag0578 . . . . . . . . Blo07g00095 Bda11g00466 . . Bpe13g00733 . Bma06g01424 . . . . Cma17g00592 . Car17g00547 Cpe12g00504 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010238 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00450 Cla_Chr08 FPKM 25.002359 28.193291 22.319433 25.121283 26.051697 19.403605 22.573826 5.572729 6.026643 7.47678