Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla08g00460 | ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGTATGTACGAAATCATCCAACTATGAAACATCAGATTTCTTTGGTTTTGTTGGTGCATTGATCTGTGTTCTTGTAGTAGGCTTTCAAGTTATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGTGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTAGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCGTCAACGCCATTGA | 1869 | 43.87 | MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYIILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQVCTKSSNYETSDFFGFVGALICVLVVGFQVIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSSDSATHWSCEHCTFVNIRSATTCEMCRQRH | 622 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 13941413 | 13948492 | + | ClCG08G004430.2 | Cla08g00460 | 278115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla08g00460 | 622 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 186 | IPR001841 | - | |
Cla08g00460 | 622 | SUPERFAMILY | RING/U-box | 210 | 278 | - | - | |
Cla08g00460 | 622 | SUPERFAMILY | RING/U-box | 290 | 338 | - | - | |
Cla08g00460 | 622 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 222 | IPR013083 | - | |
Cla08g00460 | 622 | SMART | ibrneu5 | 209 | 271 | IPR002867 | - | |
Cla08g00460 | 622 | SMART | ibrneu5 | 275 | 345 | IPR002867 | - | |
Cla08g00460 | 622 | MobiDBLite | consensus disorder prediction | 553 | 596 | - | - | |
Cla08g00460 | 622 | MobiDBLite | consensus disorder prediction | 582 | 596 | - | - | |
Cla08g00460 | 622 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 26 | 428 | - | - | |
Cla08g00460 | 622 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cla08g00460 | 622 | SMART | zf_4 | 597 | 621 | IPR001876 | - | |
Cla08g00460 | 622 | SUPERFAMILY | RING/U-box | 137 | 218 | - | - | |
Cla08g00460 | 622 | ProSiteProfiles | TRIAD supradomain profile. | 136 | 349 | IPR044066 | - | |
Cla08g00460 | 622 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cla08g00460 | 622 | Pfam | IBR domain, a half RING-finger domain | 209 | 271 | IPR002867 | - | |
Cla08g00460 | 622 | Pfam | IBR domain, a half RING-finger domain | 288 | 336 | IPR002867 | - | |
Cla08g00460 | 622 | SUPERFAMILY | Ran binding protein zinc finger-like | 595 | 620 | IPR036443 | - | |
Cla08g00460 | 622 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 456 | 569 | - | - | |
Cla08g00460 | 622 | Gene3D | - | 267 | 444 | - | - | |
Cla08g00460 | 622 | Gene3D | - | 447 | 552 | - | - | |
Cla08g00460 | 622 | Coils | Coil | 357 | 377 | - | - | |
Cla08g00460 | 622 | CDD | RING-HC_RBR_TRIAD1_like | 140 | 190 | - | - | |
Cla08g00460 | 622 | Gene3D | - | 592 | 622 | - | - | |
Cla08g00460 | 622 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 26 | 428 | IPR031127 | GO:0004842|GO:0016567 | |
Cla08g00460 | 622 | ProSitePatterns | Zinc finger RanBP2-type signature. | 599 | 618 | IPR001876 | - | |
Cla08g00460 | 622 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 456 | 569 | IPR031127 | GO:0004842|GO:0016567 | |
Cla08g00460 | 622 | MobiDBLite | consensus disorder prediction | 553 | 573 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla08g00056 | Cla-Chr8:1360300 | Cla08g00460 | Cla-Chr8:13941413 | 8.58E-14 | dispersed | |
Cla08g00460 | Cla-Chr8:13941413 | Cla11g00869 | Cla-Chr11:13793838 | 0 | dispersed | |
Cla08g00460 | Cla-Chr8:13941413 | Cla02g02040 | Cla-Chr2:35462110 | 2.46E-06 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla08g00460 | K11968 | - | csv:101223037 | 1136.71 |