Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00460 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGTATGTACGAAATCATCCAACTATGAAACATCAGATTTCTTTGGTTTTGTTGGTGCATTGATCTGTGTTCTTGTAGTAGGCTTTCAAGTTATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGTGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTAGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCGTCAACGCCATTGA 1869 43.87 MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYIILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQVCTKSSNYETSDFFGFVGALICVLVVGFQVIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSSDSATHWSCEHCTFVNIRSATTCEMCRQRH 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13941413 13948492 + ClCG08G004430.2 Cla08g00460 278115

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00460 622 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cla08g00460 622 SUPERFAMILY RING/U-box 210 278 - -
Cla08g00460 622 SUPERFAMILY RING/U-box 290 338 - -
Cla08g00460 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cla08g00460 622 SMART ibrneu5 209 271 IPR002867 -
Cla08g00460 622 SMART ibrneu5 275 345 IPR002867 -
Cla08g00460 622 MobiDBLite consensus disorder prediction 553 596 - -
Cla08g00460 622 MobiDBLite consensus disorder prediction 582 596 - -
Cla08g00460 622 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 428 - -
Cla08g00460 622 MobiDBLite consensus disorder prediction 1 21 - -
Cla08g00460 622 SMART zf_4 597 621 IPR001876 -
Cla08g00460 622 SUPERFAMILY RING/U-box 137 218 - -
Cla08g00460 622 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Cla08g00460 622 MobiDBLite consensus disorder prediction 1 15 - -
Cla08g00460 622 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Cla08g00460 622 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Cla08g00460 622 SUPERFAMILY Ran binding protein zinc finger-like 595 620 IPR036443 -
Cla08g00460 622 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 456 569 - -
Cla08g00460 622 Gene3D - 267 444 - -
Cla08g00460 622 Gene3D - 447 552 - -
Cla08g00460 622 Coils Coil 357 377 - -
Cla08g00460 622 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Cla08g00460 622 Gene3D - 592 622 - -
Cla08g00460 622 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 428 IPR031127 GO:0004842|GO:0016567
Cla08g00460 622 ProSitePatterns Zinc finger RanBP2-type signature. 599 618 IPR001876 -
Cla08g00460 622 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 456 569 IPR031127 GO:0004842|GO:0016567
Cla08g00460 622 MobiDBLite consensus disorder prediction 553 573 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00460 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101223037 1136.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00056 Cla-Chr8:1360300 Cla08g00460 Cla-Chr8:13941413 8.58E-14 dispersed
Cla08g00460 Cla-Chr8:13941413 Cla11g00869 Cla-Chr11:13793838 0 dispersed
Cla08g00460 Cla-Chr8:13941413 Cla02g02040 Cla-Chr2:35462110 2.46E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1195 Blo01g00201 . . Bda08g00149 . . . . Cmo08g00213 Cmo17g00577 . . . . . . . . . . . . . . Cla08g00460 Cam08g0887 Cec08g0471 Cco08g0586 Clacu08g0604 . Cre08g0424 Cone14ag0574 . . . . . . . . . . . Bpe05g00982 . . . . . . . Cma17g00596 Car08g00187 Car17g00550 Cpe12g00507 Cpe17g01099 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla09g01748 . 149 574 ARIADNE family AT4G34370 72.4 8.3e-184 640.2
Cla09g01748 . 43 527 ARIADNE family AT2G16090 77.4 3.8e-225 777.7
Cla09g01748 . 23 528 ARIADNE family AT3G27710 62.0 4.6e-184 641.3
Cla09g01748 . 29 507 ARIADNE family AT3G27720 54.5 5.6e-144 508.1
Cla08g00460 . 61 559 ARIADNE family AT1G05890 69.7 4.0e-213 738.0
Cla11g00869 . 62 516 ARIADNE family AT1G05890 66.9 7.1e-194 674.1
Cla08g00460 . 59 619 ARIADNE family AT1G65430 68.1 2.3e-234 808.5
Cla11g00869 . 37 568 ARIADNE family AT1G65430 70.9 1.1e-233 806.2
Cla08g00460 . 60 484 ARIADNE family AT2G31780 54.3 4.9e-139 491.5
Cla11g00869 . 49 431 ARIADNE family AT2G31780 52.8 1.5e-127 453.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00460 Cla_Chr08 FPKM 1.148148 0.0 0.0 0.0 0.0 0.0 1.583004 2.01047 4.14715 5.550077