Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00460 ATGGATTCTGAGGACGATCTTCATTACTCCACCGACGTTGAATCCGTCGACGATGATTGCGATTTCTACAGCGGTGAGATGGACATTGGTATGGGTTATTACAGCGATGACGACGACCCTGATGCTGAGGATTTCGTCGACGATGATACCGATGATTACTTCGAGTCCCGCCGACGCGAGCAAAATTATATCATACTAAATGAATCAGATATAAGACAACGCCAAGAGGACGACATTACAAGAATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAATTGTCTTGCTCCGCCACTTCAATTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAGCAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGAACCTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCTGCCTGTGGTCATCCTTTCTGTGCCTTCTGCTGGGAAGGCTACATTAGCACATCAATTAATGACGGTCCTGGATGTCTGACGTTGAGATGTCCCGATCCTTCTTGCGGTGCTGTGGTTGATCAAGACATGATTAATTCGTTGGCCTCCAATGAAGACAGGAAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAATTATGATGTTTCTTGCTTCTGCACATATGGCTTTTGCTGGAAATGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAATATGAACTGGATATTAGCAAATTCCAAGCCTTGTCCAAAGTGCAAGCGGCCAATCGAGAAAAACCAAGGGTGCATGCACATGACTTGCACACCCCCTTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCGTGGTCTGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTTGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCAATGGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAATCTCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGGTATGTACGAAATCATCCAACTATGAAACATCAGATTTCTTTGGTTTTGTTGGTGCATTGATCTGTGTTCTTGTAGTAGGCTTTCAAGTTATAATTGAATGTAGACGAGTTTTGAAATGGACTTATGCATATGGTTATTACCTGCCGGAACAGGAGCATGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTCCATCAATGTGCCGAAAAGGAATTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTCCGCACAAAGCTGGCTGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTCTCAGATGTGAACTCTCATGGAGCAAGCAGCGGCACAACGAGCTCAAAAAGCACAGCAGGAAGTAGTAAAGGAGGGAGAAGTGGACGTGGTAAGGGAGTCAGTCGAACTGCTGGTTCGACCACCAGAAGTAGTGACAGCGCAACTCATTGGTCATGTGAGCACTGTACCTTTGTGAACATTAGATCTGCTACTACGTGCGAGATGTGCCGTCAACGCCATTGA 1869 43.87 MDSEDDLHYSTDVESVDDDCDFYSGEMDIGMGYYSDDDDPDAEDFVDDDTDDYFESRRREQNYIILNESDIRQRQEDDITRISSVLSISRVASIVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERTCGICFESYPNSRIKSAACGHPFCAFCWEGYISTSINDGPGCLTLRCPDPSCGAVVDQDMINSLASNEDRKKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVSCFCTYGFCWKCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAMADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQVCTKSSNYETSDFFGFVGALICVLVVGFQVIIECRRVLKWTYAYGYYLPEQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSGTTSSKSTAGSSKGGRSGRGKGVSRTAGSTTRSSDSATHWSCEHCTFVNIRSATTCEMCRQRH 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13941413 13948492 + ClCG08G004430.2 Cla08g00460 278115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00460 622 ProSiteProfiles Zinc finger RING-type profile. 140 186 IPR001841 -
Cla08g00460 622 SUPERFAMILY RING/U-box 210 278 - -
Cla08g00460 622 SUPERFAMILY RING/U-box 290 338 - -
Cla08g00460 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 222 IPR013083 -
Cla08g00460 622 SMART ibrneu5 209 271 IPR002867 -
Cla08g00460 622 SMART ibrneu5 275 345 IPR002867 -
Cla08g00460 622 MobiDBLite consensus disorder prediction 553 596 - -
Cla08g00460 622 MobiDBLite consensus disorder prediction 582 596 - -
Cla08g00460 622 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 26 428 - -
Cla08g00460 622 MobiDBLite consensus disorder prediction 1 21 - -
Cla08g00460 622 SMART zf_4 597 621 IPR001876 -
Cla08g00460 622 SUPERFAMILY RING/U-box 137 218 - -
Cla08g00460 622 ProSiteProfiles TRIAD supradomain profile. 136 349 IPR044066 -
Cla08g00460 622 MobiDBLite consensus disorder prediction 1 15 - -
Cla08g00460 622 Pfam IBR domain, a half RING-finger domain 209 271 IPR002867 -
Cla08g00460 622 Pfam IBR domain, a half RING-finger domain 288 336 IPR002867 -
Cla08g00460 622 SUPERFAMILY Ran binding protein zinc finger-like 595 620 IPR036443 -
Cla08g00460 622 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 456 569 - -
Cla08g00460 622 Gene3D - 267 444 - -
Cla08g00460 622 Gene3D - 447 552 - -
Cla08g00460 622 Coils Coil 357 377 - -
Cla08g00460 622 CDD RING-HC_RBR_TRIAD1_like 140 190 - -
Cla08g00460 622 Gene3D - 592 622 - -
Cla08g00460 622 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 26 428 IPR031127 GO:0004842|GO:0016567
Cla08g00460 622 ProSitePatterns Zinc finger RanBP2-type signature. 599 618 IPR001876 -
Cla08g00460 622 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 456 569 IPR031127 GO:0004842|GO:0016567
Cla08g00460 622 MobiDBLite consensus disorder prediction 553 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00056 Cla-Chr8:1360300 Cla08g00460 Cla-Chr8:13941413 8.58E-14 dispersed
Cla08g00460 Cla-Chr8:13941413 Cla11g00869 Cla-Chr11:13793838 0 dispersed
Cla08g00460 Cla-Chr8:13941413 Cla02g02040 Cla-Chr2:35462110 2.46E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00460 K11968 - csv:101223037 1136.71