Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00471 ATGCACTCTCTTTTCCGTCTTCCCCGTAGAAAAATATTTTTTCTAGAGGTTCGATCTTCCTTCTTCCCCAGTCTTCGTCGTCTTTCTCATCCTACCAAAGTTTCCTCACTCAAATGCAATTTTACACCTATTGAAATCTCTCGCAACCACTCGCCTTCAGTATCTTCTTCCTTCTCCTCCTCCTCTTCCCTTTCTTCTTCCCCCTATTTCAATTCTTCTTTTTTTCAGCTCTGGGAATGCTTGTTTTTTCGTGATATTTTGATCAGAACTGCCTTGATTGTTGAAGCCTGGGATATTCCTTCGTTCTCGGACTACACCAGGCCAGAGCGCGGCAACAAGCAGCTCAGTCATTGGCTGAAAACTGATGAGGATAATTGCTTGTCAGATGTTGTCTTCAGAAGCACCCACGGGGAATTTTATCAATCCAATCTAGCTCTTAGATCGCCCATGTATCCAAAGCAAACTGGTTTGGGGGATGGACCAGTCTCCAGCCCACTACGCACAAGTGCTCGACCAAGGAGGAGGCCAATATCATATGGTCGTCCATATGTATATTATGGTTCTTCTGCAACCTTCAAACCCAACAAGAAAAGAACCCCAGCTACTAGAATTGCCAAGATGCTCCGTCCAAAGAAGCAACCCATGCCAACTGCTAATGCTGTTCCAGTTGAAAAAAATTTGCGGCGGTCTCAACGACAGAAGAGGAGGCGTACAAATTTTAGCGGTTACACAGATTCTGAAGATGAAGACTTAATGAGTCCCAAGTATAAAATGCTGAGGAGTCAGAGGGCTAATAACTCGAATAAAAATGTTTTTTCTTCTCCAAAGCATAAAAAAAGCATGGAGAACAGACCAACTCCTAGGCGTGAGGGATTACGACCGCGTCATTCACGATTAGTTTCTAGAGACCGCTTGAATTCAGAATCAGATGATGAACAAGGTAGCTCAGAAGATAAAGGAAGCCAAGATGAGATTGAGAATGGGAACGATATGGAGGATAATGATGTGGATGATATTCAAAATGATGATGAGGGTGAGCCTGAACCTGAGGATGAGGGTGAGGAAGATGGTGATGATGAAGGAGGTGAAGAAGAACAAGAGGGACGTAGACGATATGATCTTCGAAACCGTCCTGATGCTCGTAGACTCTCCATAGGTGAAGGTAAACCAAGACCAAGATCTCCTCGCAGAGTATTACATCAAGGAATGGGGACTAAGGTTGGAAGAGATGTAAGGAGGGGTGGATCAAGAGTTCATAAACGTCGTATGGCGAGGATTGAAGATTCTGATGATTCCCTTCTTGTGGATGAGCTGGACCAAGCTCCTGGTATACCATGGGCACGAGGTGGAAGTAGATCTGGCCCACCTTGGCTGTTTGGAGGATTGGATATGCATGGGACTGCGTCTTGGGGATTGAATATCGCAGCATCTGGTTGGGGTCACCAAAGTGATGCATTTTCGAGTTTAACTTCTGGTATTCAAACGGCTGGACCAAGCTCTAAGGGTGGGGCAGATATTCAACCTGTACAAGTTGATGAAAGTGTTAGCTTTGATGACATTGGTGGCTTGTCAGAATATATAGATGCTTTGAAGGAGATGGTATTCTTTCCTTTACTTTACCCCGATTTCTTTGCAAGTTATCATATAACCCCACCAAGAGGGGTGCTGTTATGTGGGCCTCCAGGTACTGGGAAAACATTAATTGCTAGAGCATTAGCCTGTGCTGCATCAAAGGCTGGCCAAAAGGTCAGTTTCTACATGCGGAAGGGTGCTGATGTTCTAAGCAAGTGGGTGGGTGAGGCTGAGCGACAATTGAAACTACTTTTTGAAGAAGCACAAAGGAATCAGCCTTCTATAATATTCTTTGATGAAATTGATGGGCTTGCTCCAGTTAGATCAAGCAAACAGGAGCAAATTCATAATTCCATCGTTTCCACATTGCTTGCTTTGATGGATGGGCTAGACTCTCGCGGTCAGGTTGTATTGATTGGAGCTACTAATCGGATTGATGCCATTGATGGAGCCCTACGCCGCCCCGGTCGTTTTGATCGTGAGTTTAACTTTCCATTGCCTGGATGTGATGCACGTGCTGAGATCTTGACCATTCACACGCGCAAGTGGAAGAATCCTCCTTCAGAGGAGCTTCGATCAGAACTTGCTGCTACTTGTGTAGGTTATTGTGGTGCTGATTTGAAGGCTCTCTGCACTGAGGCTGCTATTCGAGCTTTCCGCCAAAAGTATCCTCAGGTTTACACCAGTGATGACAAGTTTCTAATAGATGTTGAATCTGTCACGGTTGAGAAGTATCATTTTGTTGAAGCAATGTCCACAATTACTCCTGCTGCCCATCGAGGTGCTGTAGTGCATTCTCGGCCGCTATCTTCTGTAGTTGCACCATGTTTGCAAAGACATCTTCATAAAGCCATGATTTTCTTATCTGATGCCTTTCCATTAGCAGCATCATCTGAGTTTGCCAAACTGTCCATGCTTTCTTTTGGATCTGCAATTCCACTAGTGTGTAGACCACGACTTTTGCTTTGTGGTGGTGAAGACGTTGGGTTGGATCACCTTGGTCCTGCGATCTTACATGAACTGGAGAAATTTCCTGTTCATTCTCTGGGACTTCCGTCACTGCTTTCTGATCCTAGTGCAAAGACACCTGAGGAAGCATTGGTACATATATTTGGTGAAGCAAGGAGGACTACTCCATCGATACTCTACCTACCGCAGTTTCATCGTTGGTGGGAGACAGCAGATCAGCAGTTGAGAGCTGTTTTATTGACTCTGTTAGAGGAGCTACCTTCTGACCTACCCATATTACTGCTCGGAACATCCTTAGTCTCGCTTGTTGAAGTTGATGAGAAAGCTTCTATGATTTTTCCGGATCGCGGGATCTATCAAGTCAGTCCACCGTCCAGTGAAGATAAGTCTTTGTTTTTTACCCATTTAATTGAGGCTGCTTCCTCGGTTTTGCTGGAGGGCATGGATAAAAAAGTGCAAGTGTCTGGAACCTTTCCCGAGCTTCCCAAGGCTCCAGTAGTTGCCAGTGGACCAAAGGTTTCTGAGTTAAAAGCCAAGTTAGAAGCTGAACAGCATGCCCTTCGACGTTTACGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTATATGATAAAAGGTTTACGGTCTTCCATTACCCTGTTCTTGATGAGGATGCTCCCAATTACCGCTCAGTCGTCCAGAACCCAATGGACATGGCTACATTGCTTCAACGTGTTGACTCTGGACAGTATATTACATGTTCAGCATTTATTCAAGATGTCGATCTTATTGTTTCCAATGCGAAGGCTTATAATGGAGATGATTACAATGGTGCTAGGATTGTTAGCAGAGCTTACGAGCTTCGCGATGCTGTCCATGGAATGCTGACACAGATGGATCCCGCACTGGTTGCATTCTGTGACAATATAGCTGCCCAAGGTGGCCCGTTGAACGTGCCAGATGAACTTGGGGGAACTGTGTTTCCATCTGCCCCAGCTGTGCAGATGGGAACTGTTACTCGAGCTAGTGCTCGATTGCGTAATGTCCAGCCAGAGGTTGACTTCAATAGAAGTTACGAGGCATTAAAACGCCCAAAGAAGAATATGGATGCTGCTCATCATGCAGAAGAGAAACCACCCCATCAAGATTCAGTTGCACCAAAACCATCCCAGGAGCCTGATACGAGCGAAGCAAGTCGTGAAAGTTCAAAAGCCTGTCTGGGTAGTGGGAATCAGTGTGATGCTTCTGGTGAAGCTTCTGATCTCACAGATTGGAATGGTTCACAAGATGCTGCATCGGTATCAGATTGCTATATTTCGAACCAAGTTGAGTCAGTGAAGAATGTACTTGTGGAGCGAACAAGGAAGTATGGAATTCCAGAGCTTGAAAGACTATATACTCGAATAATGAAGGGTGTTTTCAAGATTAAAGATAAAGGAGGCAAGGATGATCCTAAGCATTCAATTTTGAAGTTTTTATTGAAATTTGCTGAGGATGAGTCTAATTTCTGA 4032 44.74 MHSLFRLPRRKIFFLEVRSSFFPSLRRLSHPTKVSSLKCNFTPIEISRNHSPSVSSSFSSSSSLSSSPYFNSSFFQLWECLFFRDILIRTALIVEAWDIPSFSDYTRPERGNKQLSHWLKTDEDNCLSDVVFRSTHGEFYQSNLALRSPMYPKQTGLGDGPVSSPLRTSARPRRRPISYGRPYVYYGSSATFKPNKKRTPATRIAKMLRPKKQPMPTANAVPVEKNLRRSQRQKRRRTNFSGYTDSEDEDLMSPKYKMLRSQRANNSNKNVFSSPKHKKSMENRPTPRREGLRPRHSRLVSRDRLNSESDDEQGSSEDKGSQDEIENGNDMEDNDVDDIQNDDEGEPEPEDEGEEDGDDEGGEEEQEGRRRYDLRNRPDARRLSIGEGKPRPRSPRRVLHQGMGTKVGRDVRRGGSRVHKRRMARIEDSDDSLLVDELDQAPGIPWARGGSRSGPPWLFGGLDMHGTASWGLNIAASGWGHQSDAFSSLTSGIQTAGPSSKGGADIQPVQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCDARAEILTIHTRKWKNPPSEELRSELAATCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVESVTVEKYHFVEAMSTITPAAHRGAVVHSRPLSSVVAPCLQRHLHKAMIFLSDAFPLAASSEFAKLSMLSFGSAIPLVCRPRLLLCGGEDVGLDHLGPAILHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHRWWETADQQLRAVLLTLLEELPSDLPILLLGTSLVSLVEVDEKASMIFPDRGIYQVSPPSSEDKSLFFTHLIEAASSVLLEGMDKKVQVSGTFPELPKAPVVASGPKVSELKAKLEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVLDEDAPNYRSVVQNPMDMATLLQRVDSGQYITCSAFIQDVDLIVSNAKAYNGDDYNGARIVSRAYELRDAVHGMLTQMDPALVAFCDNIAAQGGPLNVPDELGGTVFPSAPAVQMGTVTRASARLRNVQPEVDFNRSYEALKRPKKNMDAAHHAEEKPPHQDSVAPKPSQEPDTSEASRESSKACLGSGNQCDASGEASDLTDWNGSQDAASVSDCYISNQVESVKNVLVERTRKYGIPELERLYTRIMKGVFKIKDKGGKDDPKHSILKFLLKFAEDESNF 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14302104 14315490 - ClCG08G004540.2 Cla08g00471 278126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00471 1343 ProSiteProfiles Bromodomain profile. 1057 1119 IPR001487 GO:0005515
Cla08g00471 1343 SUPERFAMILY Bromodomain 1032 1144 IPR036427 GO:0005515
Cla08g00471 1343 SMART bromo_6 1034 1141 IPR001487 GO:0005515
Cla08g00471 1343 SMART AAA_5 551 692 IPR003593 -
Cla08g00471 1343 ProSitePatterns AAA-protein family signature. 660 678 IPR003960 GO:0005524|GO:0016887
Cla08g00471 1343 MobiDBLite consensus disorder prediction 275 326 - -
Cla08g00471 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 839 985 IPR027417 -
Cla08g00471 1343 Gene3D - 691 776 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 364 394 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 1197 1223 - -
Cla08g00471 1343 CDD AAA 551 690 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 238 256 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 152 174 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 1240 1266 - -
Cla08g00471 1343 Gene3D - 1026 1154 IPR036427 GO:0005515
Cla08g00471 1343 PRINTS Bromodomain signature 1082 1100 IPR001487 GO:0005515
Cla08g00471 1343 PRINTS Bromodomain signature 1066 1082 IPR001487 GO:0005515
Cla08g00471 1343 PRINTS Bromodomain signature 1100 1119 IPR001487 GO:0005515
Cla08g00471 1343 MobiDBLite consensus disorder prediction 207 419 - -
Cla08g00471 1343 Pfam ATPase family associated with various cellular activities (AAA) 555 690 IPR003959 GO:0005524|GO:0016887
Cla08g00471 1343 Gene3D - 513 783 IPR027417 -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 259 274 - -
Cla08g00471 1343 PANTHER BNAC08G44480D PROTEIN 150 1338 - -
Cla08g00471 1343 MobiDBLite consensus disorder prediction 327 363 - -
Cla08g00471 1343 CDD Bromo_AAA 1034 1144 - -
Cla08g00471 1343 PANTHER AAA DOMAIN-CONTAINING 150 1338 IPR045199 -
Cla08g00471 1343 Pfam AAA+ lid domain 717 754 IPR041569 -
Cla08g00471 1343 Pfam Bromodomain 1048 1115 IPR001487 GO:0005515
Cla08g00471 1343 MobiDBLite consensus disorder prediction 1197 1266 - -
Cla08g00471 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 777 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00471 K22531 ATAD2; ATPase family AAA domain-containing protein 2 [EC:3.6.1.-] - csv:101203476 2119.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00471 Cla-Chr8:14302104 Cla06g01067 Cla-Chr6:23155869 1.34E-49 dispersed
Cla10g01441 Cla-Chr10:29613363 Cla08g00471 Cla-Chr8:14302104 1.57E-31 dispersed
Cla08g00471 Cla-Chr8:14302104 Cla10g01920 Cla-Chr10:35062114 3.79E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1203 . . . . . . . . Cmo08g00210 . . . . . . . . . . . . . . . Cla08g00471 Cam08g0895 . Cco08g0596 Clacu08g0614 . Cre08g0434 . . . Cone11ag0618 . . . . . Blo07g00085 Bda11g00455 . . Bpe13g00740 . Bma06g01415 . . . . . . . . Cpe17g01096 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009586 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00471 Cla_Chr08 FPKM 2.0291 3.300761 69.096878 68.870621 220.271805 193.079163 193.492859 3.991286 2.864983 3.03418