Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00485 ATGTCCATAAACCAGAACCACCTCCTACGCCTGGTTCTTTCCTGCCGGAAAATCACCGCCCAGGTTACCAATCCAGCCACCTCCTCCATCGTTGCCATGGCATCCTCCTCCGAGCAGGAATTCGTCGCCTATTACCGCTCCAAACTCCACCGCTTTCCTCGATCCAACAACTTCTGGGACTCCAAAGTCGCCTCTCGCGTCGGCGAAAAGCTTGGCCATCGTTTGAAGGAGATCGGCGTGTCCGATGTTCGGATTGATCTTGCTGAAGAGCTCTCCCGCCCTGTTTACTATCGGAAGATGGTTCTGCCGCTCTTCGATTCTGTTCAGCGCTCCGGCGTCGCCGTCGATGGCGCTGAGAAGCTCGGAACAGGAACCATCCATTGCTCGATGCCCAATGACTCGATTACTCGATACACGCTAACTCGCTCCTCGAAAGTCAGAAACTCGATGGATAAGAAGCATTTGTTCATTCGTTTTGGTGGTACATGGGACAACACAAAAGAACGATATACTGGTGGTCATTTGAAGAGTATCCTAGTTTCTTTAAGCACATTGACATTTTTAGATTTGGTGAATCTAGCATATGAACTCACCCAATATTCTTTAATGGACGATCCTGATGTCCAATTTCTCCTCTTGGAGTACGATCATAGTAGGCCTCAGATATTTATAAGTCTTGAGGAAAGGCATCAAGAGGTTGTGAATGGTATCAGATTTTCTACTTGTGTTAATGAGATAGAAGACGAACCCATGTGTGGTGCAGATGTCAATGAGCATCATATTTTCTCATTGGTTGTCTCACTAGAAAACGACAACATCCATGACAATATAACGAACGCAATTCTGGTTGTTTTAGGTCGTGGTCCTGGTGTAAATGAAGAACAATCAACTACAATTCTGTTAAATGATTTTGGGCATTTTGTTGGGAATATGCCTCAAATACATGAAGCCAACATACCATCTAGTACTAATGATAGAACGGGGGACGTAATCATGCAACCACATTCTTCATCAGGGTTAGAGGATGGTATTAAAGTAGGCCAGATTTTCATCTGCACGAATGATGTGAAGATAAGATTAGCAATGTTGGCTATTAAGAACAATTTTGAGCTGTGGGTTAAGAAATCAAACAAAAGGAGTATACCAAAGGAATCGTATGGAGTACTACATGCTTATGGAGAGGCTTTAAAGACGAAAAATCTTGCAACTGTATTTGAGATTGAGCTTGAAGAATCACAATACTATAAATACATGTTTATGATATTAGGTCCAAGTTTAAGAGGTTTTCAGAGTTATCGACCTGTAATAATCGTAGATGGTACTCATCTAAAGAGTAACTACAAGGGGGCGATAATCATTGGTGTTGCCATGGATGGCAATAACCAACTCTACCCTTTGGTATATGCAATTGTCGATAGTGAAAATGATCGATCGTGTAAGTGGTTCATGACTCACCTAAAAGTAGTGATTGCAGAATGCCCCAACCTCGTGTTTGTCTCAAATCGTAGACAAAGTATAACCAATGTCGTTGATGCCGTATTCCCCACCGCCTTCCACGGACTTTGTACTTACCATTTGAAAAGGAACGTGGAGAAATACTTCAAAGATGAGTCCGTGAGAAAATTTTTTAACGATGCTTGTAGAGCTTATCAGGAATCAGAATTCAAGAGCTATTTGAGCCAAATAGTGAACTACAACAACGGTTCCCTGGCGAAATATTTGGAGGATGCTGGTGTTCATCGATGGGCACGATGTTGCCAATATGGCAACCCTGTAGTTCCTACTACATACCCCAAAACAAGCAAGGCAATTGAGCATAGCTCATCATAG 1830 42.79 MSINQNHLLRLVLSCRKITAQVTNPATSSIVAMASSSEQEFVAYYRSKLHRFPRSNNFWDSKVASRVGEKLGHRLKEIGVSDVRIDLAEELSRPVYYRKMVLPLFDSVQRSGVAVDGAEKLGTGTIHCSMPNDSITRYTLTRSSKVRNSMDKKHLFIRFGGTWDNTKERYTGGHLKSILVSLSTLTFLDLVNLAYELTQYSLMDDPDVQFLLLEYDHSRPQIFISLEERHQEVVNGIRFSTCVNEIEDEPMCGADVNEHHIFSLVVSLENDNIHDNITNAILVVLGRGPGVNEEQSTTILLNDFGHFVGNMPQIHEANIPSSTNDRTGDVIMQPHSSSGLEDGIKVGQIFICTNDVKIRLAMLAIKNNFELWVKKSNKRSIPKESYGVLHAYGEALKTKNLATVFEIELEESQYYKYMFMILGPSLRGFQSYRPVIIVDGTHLKSNYKGAIIIGVAMDGNNQLYPLVYAIVDSENDRSCKWFMTHLKVVIAECPNLVFVSNRRQSITNVVDAVFPTAFHGLCTYHLKRNVEKYFKDESVRKFFNDACRAYQESEFKSYLSQIVNYNNGSLAKYLEDAGVHRWARCCQYGNPVVPTTYPKTSKAIEHSSS 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14771771 14775231 - ClCG08G004660.2 Cla08g00485 278140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00485 609 Gene3D - 3 114 - -
Cla08g00485 609 SUPERFAMILY Translational machinery components 6 89 - -
Cla08g00485 609 Pfam MULE transposase domain 435 529 IPR018289 -
Cla08g00485 609 PANTHER 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL 4 125 IPR005484 GO:0003735|GO:0005840|GO:0006412
Cla08g00485 609 PANTHER F14B2.25/F14B2.25 4 125 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00485 - - - bhj:120081651 314.309
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00485 Cla-Chr8:14771771 Cla09g01526 Cla-Chr9:30221050 3.29E-27 dispersed
Cla01g00935 Cla-Chr1:13066923 Cla08g00485 Cla-Chr8:14771771 9.77E-25 transposed
Cla02g00876 Cla-Chr2:12422447 Cla08g00485 Cla-Chr8:14771771 8.59E-12 transposed
Cla02g02123 Cla-Chr2:36282072 Cla08g00485 Cla-Chr8:14771771 4.65E-22 transposed
Cla05g01438 Cla-Chr5:21026005 Cla08g00485 Cla-Chr8:14771771 1.26E-10 transposed
Cla05g01472 Cla-Chr5:22624341 Cla08g00485 Cla-Chr8:14771771 2.39E-06 transposed
Cla06g00921 Cla-Chr6:15295423 Cla08g00485 Cla-Chr8:14771771 3.17E-25 transposed
Cla07g00799 Cla-Chr7:22399419 Cla08g00485 Cla-Chr8:14771771 4.60E-07 transposed
Cla09g01314 Cla-Chr9:20671226 Cla08g00485 Cla-Chr8:14771771 4.61E-35 transposed
Cla10g00928 Cla-Chr10:22030889 Cla08g00485 Cla-Chr8:14771771 2.21E-19 transposed
Cla11g01033 Cla-Chr11:20625983 Cla08g00485 Cla-Chr8:14771771 1.31E-18 transposed
Cla01g01344 Cla-Chr1:26908350 Cla08g00485 Cla-Chr8:14771771 1.89E-07 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1205 . Blo12g00257 Bda03g00979 . Bpe04g00906 . . . . Cmo17g00581 . . . . . . . . . . . . . . Cla08g00485 Cam08g0901 Cec08g0492 Cco08g0603 Clacu08g0618 . Cre08g0437 . . . . . . . . . . . . . . . . . . . . Cma17g00601 . . Cpe12g00511 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009741 1 6 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00485 Cla_Chr08 FPKM 0.351406 0.753371 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0