Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00493 ATGGGGCAGAGTTCGAAGAAGAAGCGGCGTGGTGGGGGAAGGGGTGGGAAGAGAAGCAAGGGAAGGACGCCACTGACAGATTACTCGTTCAGTGGTGAAGAGAGCGAGCTTATCACAGAAGAGATCACTGCCTTGTGTGCGATCTTTCAAGAAGACTGCAAAGTTGTCACTGGCCCATCTCCTCAAGTTACCATCAAACTTAAACCATATTCAAATGACATGGGATTCGAAGATTTGGATGTATCTGCTCTTCTTTCGGTGAAGTACTTGCCTGGATACCCATACAAATGCCCAAAGTTGCTTATATCCCCGGAGAGAGGTTTGGCAAAAGGTGACACTGAAAAGCTGCTTTCTCTTCTCCATGAACAGGCAAATTATAACGCTCGAGAGGGAAGGATCATGGTTTTCAATTTGGCAGAGGCTGCTCAGGAATTCTTGTCCGAAATAGTAACTACAGGAGAATCAAATGAATTTGTTGGCTGTTCTCATACGGCTAGCACTTCTCAACTGCTTCCAGACAAGGTAACTTCAAATGAGAAGAAAGGACCTTATGTTCATGGCTATGTAGACCTCTTCAGTGGTTCTGGGGAGTTGTGGAGCTGGAGCTTTGACATGGATGAGAAGCTCAACACCCAAGCACAACCTCTTGTAGCTAATAGCTTGAAACTAGGAACAGTCCAACATAAGAAGCTTGATCAAGTTCAAAACTTATTGGCTCGGCAAAACTCAAAGCGAGGTGAATTATTGTCTCCTTCCTCTAACCTAGGTACCCTCGAGGAAGAAACTGAAGTGGACAGTCGGAGCATAAGTTCTTCTAGTTCAAGAAGATCATTAATCGTACAGAAGGATGAAGATGGTATTGAAGGTGAGAAGCAGCATGAAGTCCTTATATCCAGACGAGATTCTATTCTCACACATGATGTTGCTGAAGGCGATGGTCATGGATCTGAAAGCGAGCCTTCAGACTGGTCTTTTGCTTCCTTGAGTAATGAACAAGAGTCCCAAACTACTGAGAGGGATATAATGATGGTTCATCTGCTCCATCTTGCATGTGCCCCTAAAGGACCATTGGCTGATGCTTTGCCAGAATTGGCATCTGAACTTTACAATTTGGGGGTCCTGTCAAAAGTGGCTCTGGATTTGGCTTCTAAACCATCTTCTGTGTTTCATAAAAAGTTTGAGACTGCTTTCCAGGAACAGATGAATGCTACTAGTTTCTCCCAGTTTTGGAATCCTTCTGATTTTGGTGGTCCAACATCTTCTCAACTAAGTTCTCGGTATCTTAACGATTTTGAGGAGCTAAAGCCCCTTGGTCATGGTGGTTTTGGACATGTGGTATTATGCAAGAACAAATTAGATGGACGGCATTATGCTGTGAAAAAAATTCGCCTCAAGGACAAGATATTGCCCGTAAATGACCGCATCTTAAGGGAGGTGGCAACTCTTTCCCGTTTGCAACATCAACATGTTGTTCGGTATTATCAGGCATGGTATGAAAGTGGTGTTTCTGATTCTTATGGAGAGGTGGCTTGGGGTTCGATGACTCCATTGAGTTCTACTTTCAGCTATAAAGGTGCAAGTGCAACAGATACAGAACATGAGAATAAGATGGAATCAACATATCTCTATATCCAAATGGAATATTGCCCTAGGACTCTTCGCCAGGTTTTTGAATCATATACTCATTTTGATAAAGAATTGGCATGGCATTTATTCCATCAAATTGTGGAAGGTCTGGCACATATACATGGACAAGGGATCATTCATCGAGATTTAACTCCAAGTAACATTTTCTTTGATGCCCGCAATGATATCAAAATCGGGGATTTTGGTCTTGCTAAGTTCTTGAAGCTGGAGCAATTAGATCAAGATGTTGGCGTTCCTCTAGATACAACTGGTGTTTCAATTGATGGTACTGGTCAAGTTGGGACCTACTTTTACACAGCACCTGAAATTGAACAAGGATGGCCAAAGATTGATGAAAAAGCTGATATGTACAGCTTAGGGATTGTCTTTTTTGAACTCTGGCACCCTTTTGGAACTGCGATGGAAAGACACCTTGTTCTATCTGATTTGAAGCAGAAAGGAGAGCTTCCAACTGCTTGGGTTACTGAATTTTCTGAACAAGCATCCTTGTTACGACGTTTAATGTCTCAGAGTCCATCCGAGCGTCCTTCAGCCTTGGAACTTCTCCAGCATGCCTTTCCTCCAAGAATGGAGAACCAATTGTTAGATAACATTCTAAGGACAATGAAATCATCGGAGGACTCAAGTATATATGATAGAGTTGTTAATGCTATTTTCGATGAAGAGACATTAGTGATGAAAGATGACAGACATGATGGTGGTACTGCCCCTATCCAGTACACAGATTTGGGCACTGACGTTCGTGATCATGTCATTGACGCCACAAGGGAGATGTTCAGGCTGCATTGTGCAAAGCATTTGGAAACAAGTTCCATGTATTTGTTGGATGGCTCTACACAAATCAATAGGAACACGGTCAAACTTTTGAGCCATGGAGGAGATATACTTGAACTCTGCCATGAGCTGCGTTTACCTTTTCTTAATTGGCTTGTCTCCAGTCAGAAATCTTCATTTAAACGCTATGATATATCGTGCGTCTATAGAAGGGCAATTGGACATTCACCTCCAAACCGATACCTTCAGGGTGATTTTGATATCATTGGGGGTACATCAGCTTTGACTGAGGCAGAGGTTATCAAGGTGACTGTGGACGTTATTTCATATTTTTTTAATTCAGATTCTTGTGATATACACTTAAATCATGGAGATTTGTTGAATGCTATTTGGTCTTGGGTTGGTGTCAAGGCAGAACATAGACATAAAGTGGCCGAGCTGCTTTCAATGCTGGTATCCTTACGTCCTCAATCTTCTGAGAGGAAATCAATGTGGGTTGTGATAAGGCGCCAACTATTACAGGAACTCAAATTAGCACAAGCTGTTGTAAATAGATTGCAGACTGTAGTTTTCAGATTCTGTGGTGCAGTGGATCAGGCACTTCCTAGATTGAGGGGAGCACTTCCAACAGATAAACCAATTCGTAAAGCACTTGATGAGTTGTTAAACCTTTTCAACCACTTGAGAGTGTGGAGGCTTGAAACAAATGTTTACATAGATGCCTTAATGTCACCAACTGAGGGTTATCATCGAGATATATTTTTCCAGGTATACTTAACAAAGGAAAATAATCCTGGTTCACATCCCGAAGGTGCATTGCTTGCTATTGGTGGCCGCTATGACTACTTGCTGCAACAAATGTGGAGCCGTTCATATAAAAGTACCCCTCCTGGTGGTGTCGGGACCAGCATTGCATTAGAGACTATAATTCAGCATTCTGCTGTAGATTTGAAGCCCATCCGAAATGAGGGGAACACTAGTGTCCTGATTTGCTCACGAGGAGGAGGTGGACTATTGTTAGAACGCATGGAACTTGTTGCGGAGCTATGGGAGGAGAAGATTAAGGCTCAACTTGTCCCTACACCTGATCCCAGCCTCACAGAGCAGTATGAATATGCTAACGAGCATGACATAAAATGTCTTGTTATTATTACAGACTCTGGTGTATCTAACACAGGTTCAGTGAAGGTTCGACATCTAGAACTCAAAAAGGAGAAGGAAGTCAAACGCACATCCATTGTCAAGTTTCTCCATGAGGCAATGGCAAGCCAGTTTAAAAATCCTCTCATTTGGAATTAG 3720 42.55 MGQSSKKKRRGGGRGGKRSKGRTPLTDYSFSGEESELITEEITALCAIFQEDCKVVTGPSPQVTIKLKPYSNDMGFEDLDVSALLSVKYLPGYPYKCPKLLISPERGLAKGDTEKLLSLLHEQANYNAREGRIMVFNLAEAAQEFLSEIVTTGESNEFVGCSHTASTSQLLPDKVTSNEKKGPYVHGYVDLFSGSGELWSWSFDMDEKLNTQAQPLVANSLKLGTVQHKKLDQVQNLLARQNSKRGELLSPSSNLGTLEEETEVDSRSISSSSSRRSLIVQKDEDGIEGEKQHEVLISRRDSILTHDVAEGDGHGSESEPSDWSFASLSNEQESQTTERDIMMVHLLHLACAPKGPLADALPELASELYNLGVLSKVALDLASKPSSVFHKKFETAFQEQMNATSFSQFWNPSDFGGPTSSQLSSRYLNDFEELKPLGHGGFGHVVLCKNKLDGRHYAVKKIRLKDKILPVNDRILREVATLSRLQHQHVVRYYQAWYESGVSDSYGEVAWGSMTPLSSTFSYKGASATDTEHENKMESTYLYIQMEYCPRTLRQVFESYTHFDKELAWHLFHQIVEGLAHIHGQGIIHRDLTPSNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGVPLDTTGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGIVFFELWHPFGTAMERHLVLSDLKQKGELPTAWVTEFSEQASLLRRLMSQSPSERPSALELLQHAFPPRMENQLLDNILRTMKSSEDSSIYDRVVNAIFDEETLVMKDDRHDGGTAPIQYTDLGTDVRDHVIDATREMFRLHCAKHLETSSMYLLDGSTQINRNTVKLLSHGGDILELCHELRLPFLNWLVSSQKSSFKRYDISCVYRRAIGHSPPNRYLQGDFDIIGGTSALTEAEVIKVTVDVISYFFNSDSCDIHLNHGDLLNAIWSWVGVKAEHRHKVAELLSMLVSLRPQSSERKSMWVVIRRQLLQELKLAQAVVNRLQTVVFRFCGAVDQALPRLRGALPTDKPIRKALDELLNLFNHLRVWRLETNVYIDALMSPTEGYHRDIFFQVYLTKENNPGSHPEGALLAIGGRYDYLLQQMWSRSYKSTPPGGVGTSIALETIIQHSAVDLKPIRNEGNTSVLICSRGGGGLLLERMELVAELWEEKIKAQLVPTPDPSLTEQYEYANEHDIKCLVIITDSGVSNTGSVKVRHLELKKEKEVKRTSIVKFLHEAMASQFKNPLIWN 1239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14881653 14970817 + ClCG08G004740.2 Cla08g00493 278148

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00493 1239 Pfam RWD domain 37 146 IPR006575 GO:0005515
Cla08g00493 1239 SUPERFAMILY Class II aaRS and biotin synthetases 789 1117 IPR045864 -
Cla08g00493 1239 Coils Coil 976 996 - -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 1 32 - -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 1 17 - -
Cla08g00493 1239 ProSitePatterns Protein kinases ATP-binding region signature. 437 461 IPR017441 GO:0005524
Cla08g00493 1239 ProSiteProfiles RWD domain profile. 40 149 IPR006575 GO:0005515
Cla08g00493 1239 Gene3D Phosphorylase Kinase; domain 1 419 548 - -
Cla08g00493 1239 SUPERFAMILY UBC-like 34 146 IPR016135 -
Cla08g00493 1239 Pfam Protein kinase domain 431 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00493 1239 SMART RWD2001b 40 149 IPR006575 GO:0005515
Cla08g00493 1239 ProSitePatterns Tyrosine protein kinases specific active-site signature. 587 599 IPR008266 GO:0004672|GO:0006468
Cla08g00493 1239 PANTHER EIF-2-ALPHA KINASE GCN2 37 1239 - -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 245 291 - -
Cla08g00493 1239 SUPERFAMILY Protein kinase-like (PK-like) 427 754 IPR011009 -
Cla08g00493 1239 Gene3D Ubiquitin Conjugating Enzyme 28 156 IPR016135 -
Cla08g00493 1239 Pfam Histidyl-tRNA synthetase 874 1115 IPR041715 -
Cla08g00493 1239 Gene3D Transferase(Phosphotransferase) domain 1 551 745 - -
Cla08g00493 1239 Gene3D - 1130 1230 IPR036621 -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 245 259 - -
Cla08g00493 1239 SUPERFAMILY Class II aaRS ABD-related 1135 1229 - -
Cla08g00493 1239 Pfam Anticodon binding domain of tRNAs 1134 1231 IPR024435 -
Cla08g00493 1239 Gene3D Bira Bifunctional Protein; Domain 2 788 1125 IPR045864 -
Cla08g00493 1239 ProSiteProfiles Protein kinase domain profile. 431 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00493 1239 PANTHER HISTIDYL-TRNA SYNTHETASE 37 1239 - -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 308 336 - -
Cla08g00493 1239 MobiDBLite consensus disorder prediction 320 336 - -
Cla08g00493 1239 CDD STKc_EIF2AK4_GCN2_rpt2 424 734 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00493 K16196 EIF2AK4; eukaryotic translation initiation factor 2-alpha kinase 4 [EC:2.7.11.1] - csv:101207000 2268.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00493 Cla-Chr8:14881653 Cla04g00064 Cla-Chr4:2204231 1.10E-22 dispersed
Cla11g00807 Cla-Chr11:11909382 Cla08g00493 Cla-Chr8:14881653 3.76E-15 dispersed
Cla08g00493 Cla-Chr8:14881653 Cla09g00681 Cla-Chr9:6536456 2.24E-22 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1208 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g00493 Cam08g0910 Cec08g0501 Cco08g0611 Clacu08g0621 . Cre08g0443 . . . . . . . . . . . . . . . . . . . . . Car08g00180 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006684 2 4 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 2 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80724 PF00069 Pkinase 1.70E-51 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00493 Cla_Chr08 FPKM 24.508417 22.174067 21.809404 22.013283 17.542492 20.87191 23.655809 19.149269 18.983364 21.560024