Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00508 ATGAACCTCACTACTCTTGTTTTCTGGATCATCCAGATCTCCATCCATGCAGTTCCAGTTTTTTCTAAAACCAAAGCGCCAGACGTTTCTGCATTGAATGTGATGTTTAGTAGTTTAAATTCACCTTCACAACTCTCTGGTTGGGGTTCAAGTGGGGGTGATCCATGTGGGGATTCTTGGGAAGGGATCCAATGCTCAGGATCATCTGTCACTGAAATAAGTTTATCAGACTTTGGACTAAGTGGTTCAATGGGTTACCAGCTTTCAAATTTGGCAACTGTCACCTACTTTGATTTGAGCAAGAACAACCTCGATGGTGATATCCCCTATCAACTTCCCCCCAATGCAGTTCACATCGATCTTTCTGGGAACAGCTTCACGGGTAGTGTGCCTTATTCAATTTCTCAGATGGCTGATCTTGAATTTTTAAATCTTGGTCATAATAAGCTTAGCAACCAATTGAGTGACATGTTTGGCAAGCTTTCTAAACTCAAAAGGATGGATCTCTCATACAACTCAATTTCAGGAAACTTACCTCAAAGTTTTAAGAAGCTTTCAAGCCTTACCGTATTGCATATACAAGATAATAAATTTTCAGGTTCAATCAATGTTCTTGCTGACCTTCCACTTGATGATTTGAATGTTGCAAATAACAAATTCACCGGATGGATTCCTGAAAGTCTTGAAGCTATAGATAATTTGGAAACTGTAGGAAATTCATGGTCATCTGGGCCAGCACCACCTCCACCACCAGGGACGGTATCTCCGAAAGGGAAGAACTCGAAGAAGGAGGAGTCGAACGGGAAATCGTCGGTGATAAGTGGGTTAGTGATAGCAGGAATAGCCATGGGAGTTTTAGCAATAATAGCAATAGTGATTGGATTTATGTCAAGAAGGCATAAATCCTTCACTCCTTCCCATTTTCTTGATGAAGACACAAGCCAACACAGATCCTTCACTCCACTCACATCCCAGGAACTCCCAAAGGGAGATTTGTACAATAATAATAATAATAATAATGCTAATAATAATACTAATAATGATAGAAAATCCTTCAATTCTGATGCCTCTGTTGACATAAAAGGTCTAAGTGTTGTTAGGCCACCTCCAGCTCCTTCTGATCCTGTTCAATCCTTCAGTGATAATCAATTTGCAAGCCGTTTGAATTCAAGGAGAAGCACTTCCTTTCGTGCCATTTCTTATTCTTTACTTGATTTGCAAACTGCCACTTCCAATTTTGCCCCTGCTCGCCTTCTCGGTGAGGGTACGATCGGACGTGTTTATAAGGCTAAGTATGGAGATGGAAAGGTATTGGCAGTGAAGAAGATAGATTCATCAGTTTTTCAAGGTAGAAGAACAGAGGAGTTTGGTGAAGTAGTTGGAATAATCTCAAAGCTTCATCACACAAACATTACAGAAGTGGTTGGGTTTTGTTCAGAGCAAGGACATCATTTGCTGGTTTATGAATATTTCATGAATGGTTCACTTCATGAGTTTCTTCATATGTCTGATGACTTTAGTAAACCACTCACTTGGAACACTAGAGTCAGAATTGCTTTGGGGACTGCAAGAGCTCTTGAGTATCTTCACGAAGTTTGCTCACCATCCATAATTCACATGAATATCAAGTCCTCTAATATATTGCTTGATGCGGAACTTAATCCTCGTCTCTCAGATTATGGTTTGGCAACATTTTATAAGCATAGAAGCCAAAACCCTGGAGGTGGATATGATGCTCCAGAATGCCTAAAGGGTTCAAGTTATACAATGAAGAGTGATATTTACAGTTTGGGAGTGGTGATGTTGGAGTTGTTGACGGGGCGGATGCCTTATGACTCTGGGAAAGCCAAAGTGGAACAATGTCTAGTAAGATGGGCAACACCACAGCTACATGACATAGATGCATTGGACAAAATGGTGGATCCTGCCTTGCGAGGTTTATATCCTCCAAAATCAGTGTCTAGATTTGCAGATATCATTGCCCTTTGCGTTCAATCAGAGCCTGAATTTAGGCCTCCCATGTCCGAAGTGGTTCAAGCCTTGGTTACTTTGGTTCAACGATCAAGCATGAATATGAGAGATGATCTTGGAAACTCTCGACGAATGGATGATTATGACTATTAA 2124 40.73 MNLTTLVFWIIQISIHAVPVFSKTKAPDVSALNVMFSSLNSPSQLSGWGSSGGDPCGDSWEGIQCSGSSVTEISLSDFGLSGSMGYQLSNLATVTYFDLSKNNLDGDIPYQLPPNAVHIDLSGNSFTGSVPYSISQMADLEFLNLGHNKLSNQLSDMFGKLSKLKRMDLSYNSISGNLPQSFKKLSSLTVLHIQDNKFSGSINVLADLPLDDLNVANNKFTGWIPESLEAIDNLETVGNSWSSGPAPPPPPGTVSPKGKNSKKEESNGKSSVISGLVIAGIAMGVLAIIAIVIGFMSRRHKSFTPSHFLDEDTSQHRSFTPLTSQELPKGDLYNNNNNNNANNNTNNDRKSFNSDASVDIKGLSVVRPPPAPSDPVQSFSDNQFASRLNSRRSTSFRAISYSLLDLQTATSNFAPARLLGEGTIGRVYKAKYGDGKVLAVKKIDSSVFQGRRTEEFGEVVGIISKLHHTNITEVVGFCSEQGHHLLVYEYFMNGSLHEFLHMSDDFSKPLTWNTRVRIALGTARALEYLHEVCSPSIIHMNIKSSNILLDAELNPRLSDYGLATFYKHRSQNPGGGYDAPECLKGSSYTMKSDIYSLGVVMLELLTGRMPYDSGKAKVEQCLVRWATPQLHDIDALDKMVDPALRGLYPPKSVSRFADIIALCVQSEPEFRPPMSEVVQALVTLVQRSSMNMRDDLGNSRRMDDYDY 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 15265579 15274595 - ClCG08G004900.1 Cla08g00508 278163

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00508 707 MobiDBLite consensus disorder prediction 307 383 - -
Cla08g00508 707 MobiDBLite consensus disorder prediction 238 269 - -
Cla08g00508 707 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Cla08g00508 707 Gene3D Ribonuclease Inhibitor 25 255 IPR032675 -
Cla08g00508 707 MobiDBLite consensus disorder prediction 315 353 - -
Cla08g00508 707 ProSiteProfiles Protein kinase domain profile. 413 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00508 707 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 5 19 703 - -
Cla08g00508 707 PANTHER OS01G0253100 PROTEIN 19 703 IPR045271 GO:0004714|GO:0006468
Cla08g00508 707 Pfam Protein kinase domain 416 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00508 707 Gene3D Transferase(Phosphotransferase) domain 1 491 704 - -
Cla08g00508 707 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cla08g00508 707 Pfam Leucine rich repeat 156 198 IPR001611 GO:0005515
Cla08g00508 707 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Cla08g00508 707 SUPERFAMILY L domain-like 27 236 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00508 - - - csv:101209107 1204.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00957 Cla-Chr1:13509629 Cla08g00508 Cla-Chr8:15265579 0 dispersed
Cla01g02225 Cla-Chr1:36225544 Cla08g00508 Cla-Chr8:15265579 6.62E-125 dispersed
Cla07g01353 Cla-Chr7:30688980 Cla08g00508 Cla-Chr8:15265579 8.60E-68 dispersed
Cla08g00508 Cla-Chr8:15265579 Cla10g01655 Cla-Chr10:32235033 4.65E-40 dispersed
Cla08g00508 Cla-Chr8:15265579 Cla02g00126 Cla-Chr2:1403708 1.70E-158 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla01g00957 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.2 1.4e-84 311.2
Cla10g01655 . 1 712 Strubbelig Receptor Gene Family AT5G06820 51.1 8.0e-171 597.8
Cla02g00126 . 34 718 Strubbelig Receptor Gene Family AT4G03390 60.0 7.6e-196 681.0
Cla01g02225 . 59 605 Strubbelig Receptor Gene Family AT4G03390 50.3 3.3e-130 463.0
Cla09g00135 . 540 879 Strubbelig Receptor Gene Family AT4G03390 51.2 2.6e-87 320.5
Cla08g00508 . 20 685 Strubbelig Receptor Gene Family AT3G13065 54.4 6.8e-148 521.5
Cla09g00135 . 541 877 Strubbelig Receptor Gene Family AT3G13065 51.3 1.6e-91 334.3
Cla02g00126 . 430 708 Strubbelig Receptor Gene Family AT3G13065 50.4 5.9e-75 279.3
Cla08g00508 . 22 707 Strubbelig Receptor Gene Family AT1G78980 60.4 1.9e-193 672.9
Cla01g02225 . 307 605 Strubbelig Receptor Gene Family AT1G78980 52.7 4.2e-84 309.7
Cla07g01353 . 77 817 Strubbelig Receptor Gene Family AT1G53730 50.4 2.3e-178 622.9
Cla09g00135 . 49 904 Strubbelig Receptor Gene Family AT1G53730 50.5 2.1e-171 599.7
Cla08g00508 . 20 693 Strubbelig Receptor Gene Family AT1G53730 50.4 1.3e-154 543.9
Cla01g00957 . 7 689 Strubbelig Receptor Gene Family AT1G53730 50.9 4.7e-147 518.8
Cla01g02225 . 312 605 Strubbelig Receptor Gene Family AT3G14350 51.2 2.4e-76 283.9
Cla01g00957 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.2 4.4e-177 618.2
Cla09g00135 . 538 896 Strubbelig Receptor Gene Family AT4G22130 57.4 2.2e-112 403.3
Cla07g01353 . 509 824 Strubbelig Receptor Gene Family AT4G22130 60.1 1.8e-109 393.7
Cla02g00126 . 427 720 Strubbelig Receptor Gene Family AT4G22130 60.7 1.7e-104 377.1
Cla08g00508 . 360 707 Strubbelig Receptor Gene Family AT4G22130 52.4 1.3e-99 360.9
Cla01g02225 . 317 605 Strubbelig Receptor Gene Family AT4G22130 59.8 4.8e-99 359.0
Cla10g01655 . 374 696 Strubbelig Receptor Gene Family AT4G22130 51.7 9.7e-92 334.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010758 0 1 1 1 0 1 2 0 0 1 1 1 2 1 0 2 1 1 2 1 1 0 1 0 0 1 1 0 0 1 24
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80725 PF00069 Pkinase 2.30E-43 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00508 Cla_Chr08 FPKM 22.501522 19.71711 29.138193 28.503386 28.342562 25.305479 21.605967 46.349243 47.923065 46.922676