Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g00517 | ATGGCTTTGGTTCTGAGTTCTATGAAAGTCTCCAATGACTGCTTTTTGCATGACTTAATCAATTTTTATATATATATAAACCCTCTAAAAGCTTCTTTTGGTGAAGAGATGAGCTCCAATCATTTAGAGATGATGAGCAACCATTTTACAGTGGAGAACTCCGATCAAAGTGATCAAGGACCAATCAGCTCCATTAATCCTTTTTTCACTGAGAGCTTTTGTCTTGAAAAGTTTGCTTATTTTAATGAAATCCCTAGCTGTGTTCCACCTCCTCTTTACTCTTCATTTCCTACATTTAACAGAGAAGATCCCAAGAGGTTGGGAGGAAGAAAGAGGAAAAGAGAAAATGAAAGGGATGAGGAGAAGCCAAAAGAAGTGATTCATGTGCGGGCAAAAAGAGGTGAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTAAGAAGAGAGAAAATAAACCAGAGACTGAGGTTCTTACAGGACTTGGTTCCAGGATGCTACAAGACAATGGGAATGGCAGTTATGTTGGATGTGATCATAAATTACATCCAATCTCTGCAGAATCAGATTGAGTTTCTCTCCATGAAGCTTTCAGTTGCTAGTCGCTACTATGATTTCAACAACAGCTCGGAGACTAATGGCCCCGAGATAATGCAGGCAACAAATGGGTGTGATGATATTCAAGAGATGCAGAGGATTGTACTTAGAGAAGAAGGGTATGGAGGGCCCTCTTACCACCACTCTACTTTTCCACCTCTCTAA | 759 | 40.18 | MALVLSSMKVSNDCFLHDLINFYIYINPLKASFGEEMSSNHLEMMSNHFTVENSDQSDQGPISSINPFFTESFCLEKFAYFNEIPSCVPPPLYSSFPTFNREDPKRLGGRKRKRENERDEEKPKEVIHVRAKRGEATDSHSLAERVRREKINQRLRFLQDLVPGCYKTMGMAVMLDVIINYIQSLQNQIEFLSMKLSVASRYYDFNNSSETNGPEIMQATNGCDDIQEMQRIVLREEGYGGPSYHHSTFPPL | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 15720437 | 15726998 | + | ClCG08G004990.2 | Cla08g00517 | 278172 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g00517 | 252 | CDD | bHLH_AtBPE_like | 125 | 209 | - | - | |
| Cla08g00517 | 252 | Gene3D | - | 132 | 203 | IPR036638 | GO:0046983 | |
| Cla08g00517 | 252 | PANTHER | TRANSCRIPTION FACTOR BHLH75 | 87 | 237 | - | - | |
| Cla08g00517 | 252 | Pfam | Helix-loop-helix DNA-binding domain | 139 | 186 | IPR011598 | GO:0046983 | |
| Cla08g00517 | 252 | MobiDBLite | consensus disorder prediction | 103 | 125 | - | - | |
| Cla08g00517 | 252 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 87 | 237 | IPR024097 | GO:0006355 | |
| Cla08g00517 | 252 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 135 | 185 | IPR011598 | GO:0046983 | |
| Cla08g00517 | 252 | MobiDBLite | consensus disorder prediction | 99 | 125 | - | - | |
| Cla08g00517 | 252 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 133 | 203 | IPR036638 | GO:0046983 | |
| Cla08g00517 | 252 | SMART | finulus | 141 | 191 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla04g01091 | Cla-Chr4:26084619 | Cla08g00517 | Cla-Chr8:15720437 | 6.46E-12 | dispersed | |
| Cla05g01234 | Cla-Chr5:14153557 | Cla08g00517 | Cla-Chr8:15720437 | 1.81E-42 | dispersed | |
| Cla08g00517 | Cla-Chr8:15720437 | Cla05g00770 | Cla-Chr5:7352450 | 4.65E-38 | dispersed | |
| Cla08g00517 | Cla-Chr8:15720437 | Cla06g01463 | Cla-Chr6:28183341 | 2.78E-52 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 61524 | PF00010 | HLH | 8.10E-06 | No_clan | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g00517 | - | - | cpep:111809259 | 302.753 |