Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00529 ATGGTTTACTCCGACAAAATGCAAGAAATTGCATCCAAAATGGGTTTCACACTCTCCGATTTCGCCGATACTTTGGAACAAGAACGCCGTAAAGTCCTCATGTTTCAGCGCGAGCTCCCTCTCTGTTTGCAGCTCGTTTCCCATGCCATTGATTGTTGCAGGCAGCAGTTATCGGAGACGACGACGGAAAATCGTCAATCGGAATGCTCCGAGCAGACTTCCAGTGACATGGGTCCGGTTCTTGAGGAGTTCATTCCGATTAACAGAAATGGGGTTTCTGATTTTGAACAAACGGAGAAAAATAAGAATAACGACGACTCTGATTTAAACAATTTGAATTTGGCTCCGTCTGATTGGCTCAGATCTGCTCAGCTTTGGAATCAGACTTCAGATCCTCCTCCCCTGAATCAGGACCAGGCAGAGAACACGCCGGTTGTTGACGTCAACAGAAATGGCGGCGCTTTCCGGCCGTTTCAGAAGGAGAAAACCGGTAGCGCCGGCGGGGGAGGTGGGGCATCCTCGTCTTCAGCTCCGGCTCCGGCTGCGGAAACGAGCTCGACGACGGAGACGGGGTCAGGCGGAAGTAGCCGACGGGAAGAGAAGGAAGCTCAGAATCAGAGGAAACAGAGACGGTGCTGGTCGCCGGAGCTGCACCGGCGGTTCCTTCATGCACTTCAGCAGCTCGGAGGTTCCCATGTGGCGACGCCGAAGCAAATAAGGGAATTGATGAAGGTGGATGGTCTTACCAACGACGAAGTGAAAAGTCATCTACAGAAGTATCGTCTGCACACGAGACGGCCAAGTCCGACGATCCACAACAACGAGAGCGGCCACGCGCCTCAGTTCCTGGTGGTTGGCGGCATATGGGTACCGGCGGCCGAGTACGCCGCCATGTCCACCACCACTTCCTCGGGAGAAGCAGTCAGCGCCGCTACCACGAACGGAATTTATGCACCGGTGGCAGCAGCGGCAGCGCCGCATCCATTACCCAGCACAGTCCAAAAGCCCAAACCCAAGATCCCTTCCTCCGCAGCCGTCGCCGCCGCCGAATCTAATTCTCCGACTACATCTTCCTCTACTCATACGTCTTCAGTTTCACCAGCTGCCTCTTGA 1113 54.36 MVYSDKMQEIASKMGFTLSDFADTLEQERRKVLMFQRELPLCLQLVSHAIDCCRQQLSETTTENRQSECSEQTSSDMGPVLEEFIPINRNGVSDFEQTEKNKNNDDSDLNNLNLAPSDWLRSAQLWNQTSDPPPLNQDQAENTPVVDVNRNGGAFRPFQKEKTGSAGGGGGASSSSAPAPAAETSSTTETGSGGSSRREEKEAQNQRKQRRCWSPELHRRFLHALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPTIHNNESGHAPQFLVVGGIWVPAAEYAAMSTTTSSGEAVSAATTNGIYAPVAAAAAPHPLPSTVQKPKPKIPSSAAVAAAESNSPTTSSSTHTSSVSPAAS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16147393 16150700 + ClCG08G005100.1 Cla08g00529 278184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00529 370 MobiDBLite consensus disorder prediction 126 212 - -
Cla08g00529 370 MobiDBLite consensus disorder prediction 346 370 - -
Cla08g00529 370 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 18 364 IPR044787 GO:0003700|GO:0006355
Cla08g00529 370 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
Cla08g00529 370 MobiDBLite consensus disorder prediction 126 146 - -
Cla08g00529 370 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Cla08g00529 370 PANTHER TRANSCRIPTION FACTOR HHO2 18 364 - -
Cla08g00529 370 Pfam Myb-like DNA-binding domain 210 261 IPR001005 -
Cla08g00529 370 MobiDBLite consensus disorder prediction 194 212 - -
Cla08g00529 370 MobiDBLite consensus disorder prediction 327 370 - -
Cla08g00529 370 Gene3D - 207 265 - -
Cla08g00529 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Cla08g00529 370 MobiDBLite consensus disorder prediction 168 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01045 Cla-Chr6:22629347 Cla08g00529 Cla-Chr8:16147393 1.51E-52 dispersed
Cla08g00529 Cla-Chr8:16147393 Cla11g00246 Cla-Chr11:2893201 2.13E-48 dispersed
Cla05g02327 Cla-Chr5:34851069 Cla08g00529 Cla-Chr8:16147393 7.97E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61525 PF00249 Myb_DNA-binding 1.60E-06 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00529 - - csv:101210056 557.37