Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00534 ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGGTTACGTACAGAGAGTGGAGAGAGAAAGTGATATCTGTTTTACCTCTGGAAGAAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCTACCTACCATACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAACGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCAATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCGAGAGACTGA 1581 46.81 MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEGYVQRVERESDICFTSGRSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIYLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 526
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 16299750 16303232 + ClCG08G005150.2 Cla08g00534 278189

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00534 526 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 110 526 - -
Cla08g00534 526 PANTHER TRANSCRIPTION FACTOR TGA9 110 526 - -
Cla08g00534 526 Gene3D - 240 289 - -
Cla08g00534 526 SMART brlzneu 237 308 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 283 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 Pfam Seed dormancy control 325 398 IPR025422 GO:0006351|GO:0043565
Cla08g00534 526 SUPERFAMILY Leucine zipper domain 241 284 IPR046347 GO:0003700|GO:0006355
Cla08g00534 526 ProSiteProfiles DOG1 domain profile. 307 523 IPR025422 GO:0006351|GO:0043565
Cla08g00534 526 Coils Coil 260 287 - -
Cla08g00534 526 Pfam bZIP transcription factor 240 280 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 CDD bZIP_HBP1b-like 241 293 - -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00534 K14431 TGA; transcription factor TGA - csv:101210308 832.017
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00534 Cla-Chr8:16299750 Cla08g01072 Cla-Chr8:23407805 2.12E-18 dispersed
Cla11g01696 Cla-Chr11:30558671 Cla08g00534 Cla-Chr8:16299750 3.82E-18 dispersed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01575 . 6 353 bZIP Transcription Factor Family AT1G45249 54.8 3.4e-86 315.8
Cla10g00124 CCT 1 344 bZIP Transcription Factor Family AT2G35530 67.3 2.5e-105 379.4
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT2G35530 60.2 4.9e-101 365.2
Cla02g01861 . 59 389 bZIP Transcription Factor Family AT2G40620 50.6 2.6e-69 259.6
Cla02g00474 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.9e-38 155.2
Cla02g00475 . 382 518 bZIP Transcription Factor Family AT2G40620 66.4 3.4e-37 152.9
Cla02g01168 . 1 233 bZIP Transcription Factor Family AT4G35040 62.1 8.0e-65 244.2
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT4G35040 58.8 4.6e-60 228.4
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT5G06950 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT5G06950 72.0 2.6e-129 458.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT5G06950 69.9 3.6e-118 421.8
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT5G06950 57.0 2.7e-110 395.6
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT5G06950 60.6 1.7e-88 323.2
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT5G06950 58.2 1.6e-86 316.6
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06950 55.8 1.3e-83 307.0
Cla07g00891 . 78 360 bZIP Transcription Factor Family AT5G06950 54.0 2.4e-74 276.2
Cla11g00770 CCT,ECH 130 422 bZIP Transcription Factor Family AT5G06950 51.8 1.2e-70 263.8
Cla01g01215 . 128 481 bZIP Transcription Factor Family AT1G08320 68.1 5.7e-130 461.1
Cla02g02151 . 199 510 bZIP Transcription Factor Family AT1G08320 68.3 7.2e-117 417.5
Cla05g02693 . 67 377 bZIP Transcription Factor Family AT1G08320 56.6 1.1e-91 334.0
Cla10g01652 . 172 466 bZIP Transcription Factor Family AT1G08320 58.6 2.6e-90 329.3
Cla08g00534 . 236 526 bZIP Transcription Factor Family AT1G08320 58.8 7.5e-90 327.8
Cla08g01072 CCT,ECH 163 516 bZIP Transcription Factor Family AT1G08320 51.1 2.4e-88 322.8
Cla02g01168 . 1 266 bZIP Transcription Factor Family AT2G16770 59.2 5.3e-66 248.1
Cla02g00428 CCT 1 263 bZIP Transcription Factor Family AT2G16770 56.4 4.4e-60 228.4
Cla08g01072 CCT,ECH 142 516 bZIP Transcription Factor Family AT5G06960 66.4 3.0e-119 425.2
Cla05g02693 . 44 377 bZIP Transcription Factor Family AT5G06960 69.8 1.8e-116 416.0
Cla08g00534 . 221 526 bZIP Transcription Factor Family AT5G06960 68.0 6.5e-106 380.9
Cla10g01552 . 157 563 bZIP Transcription Factor Family AT5G06960 54.2 6.5e-98 354.4
Cla10g01652 . 181 466 bZIP Transcription Factor Family AT5G06960 60.1 1.5e-86 316.6
Cla01g01215 . 164 452 bZIP Transcription Factor Family AT5G06960 56.3 5.9e-83 304.7
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT5G06960 54.8 6.6e-82 301.2
Cla07g00891 . 53 360 bZIP Transcription Factor Family AT5G06960 51.3 2.1e-72 269.6
Cla02g00474 . 1 517 bZIP Transcription Factor Family AT4G38900 59.9 8.5e-133 471.1
Cla02g00475 . 1 512 bZIP Transcription Factor Family AT4G38900 59.7 1.4e-132 470.3
Cla05g00774 . 207 330 bZIP Transcription Factor Family AT4G38900 70.2 1.1e-36 151.8
Cla02g00475 . 2 534 bZIP Transcription Factor Family AT2G21230 51.4 1.6e-101 367.1
Cla02g00474 . 64 535 bZIP Transcription Factor Family AT2G21230 54.1 1.2e-99 360.9
Cla02g00218 . 1 249 bZIP Transcription Factor Family AT2G42380 57.4 2.9e-57 219.2
Cla01g01889 . 1 350 bZIP Transcription Factor Family AT4G36730 50.3 1.4e-60 230.3
Cla08g01072 CCT,ECH 123 516 bZIP Transcription Factor Family AT3G12250 67.0 1.2e-129 459.9
Cla05g02693 . 24 377 bZIP Transcription Factor Family AT3G12250 71.5 8.4e-128 453.8
Cla08g00534 . 195 526 bZIP Transcription Factor Family AT3G12250 69.0 3.9e-117 418.3
Cla10g01552 . 136 563 bZIP Transcription Factor Family AT3G12250 57.4 3.6e-110 395.2
Cla10g01652 . 195 466 bZIP Transcription Factor Family AT3G12250 60.3 8.5e-88 320.9
Cla01g01215 . 169 452 bZIP Transcription Factor Family AT3G12250 57.9 1.5e-84 310.1
Cla02g02151 . 201 483 bZIP Transcription Factor Family AT3G12250 56.4 4.4e-84 308.5
Cla07g00891 . 47 360 bZIP Transcription Factor Family AT3G12250 51.5 1.4e-74 276.9
Cla11g00770 CCT,ECH 121 422 bZIP Transcription Factor Family AT3G12250 50.6 3.6e-70 262.3
Cla08g00534 . 75 526 bZIP Transcription Factor Family AT1G68640 62.5 8.8e-144 507.3
Cla05g02693 . 21 377 bZIP Transcription Factor Family AT1G68640 60.3 5.0e-107 385.2
Cla08g01072 CCT,ECH 117 516 bZIP Transcription Factor Family AT1G68640 55.6 5.6e-106 381.7
Cla10g01552 . 134 563 bZIP Transcription Factor Family AT1G68640 51.5 1.0e-99 360.9
Cla10g01652 . 183 466 bZIP Transcription Factor Family AT1G68640 56.8 9.9e-87 317.8
Cla01g01215 . 174 452 bZIP Transcription Factor Family AT1G68640 56.7 1.2e-84 310.8
Cla02g02151 . 179 483 bZIP Transcription Factor Family AT1G68640 53.0 3.1e-80 296.2
Cla08g00706 . 9 337 bZIP Transcription Factor Family AT1G43700 50.1 3.9e-59 225.7
Cla05g00118 . 11 416 bZIP Transcription Factor Family AT2G46270 50.9 6.4e-81 298.1
Cla05g00774 . 42 370 bZIP Transcription Factor Family AT2G31370 71.3 1.1e-113 407.1
Cla05g00777 . 81 396 bZIP Transcription Factor Family AT2G31370 67.4 2.3e-103 372.9
Cla08g00864 . 17 321 bZIP Transcription Factor Family AT3G56850 56.5 6.5e-71 264.6
Cla10g00124 CCT 1 346 bZIP Transcription Factor Family AT1G32150 62.6 1.1e-97 354.0
Cla09g01088 CCT 1 357 bZIP Transcription Factor Family AT1G32150 59.8 1.0e-92 337.4
Cla05g00774 . 10 365 bZIP Transcription Factor Family AT1G06070 69.7 2.5e-124 442.6
Cla05g00777 . 39 395 bZIP Transcription Factor Family AT1G06070 68.5 3.2e-119 425.6
Cla08g00706 . 146 312 bZIP Transcription Factor Family AT1G06070 56.5 1.6e-38 157.5
Cla02g00475 . 382 514 bZIP Transcription Factor Family AT1G06070 67.4 6.1e-38 155.6
Cla02g00474 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 1.0e-37 154.8
Cla08g01246 . 89 325 bZIP Transcription Factor Family AT5G24800 51.6 3.1e-51 199.1
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005530 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 4 1 40
       

Regulatory proteins


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61526 PF14144 DOG1 2.20E-29 No_clan Cla TF
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00534 Cla_Chr08 FPKM 0.0 0.248878 2.177902 2.267728 2.406149 3.730338 2.836919 3.413576 4.281768 4.1815