Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00534 ATGTTCAACAATGGTCTGTCTTTAAACGCCATTGTTTCGCTTTGTAAAGTCGAAGAAGAGGAAGAAGAAAAAGGAAAAGACGAAAAAAGGTTCGAAAATGGTGGATTAGACGTTGGAGATAGAAACGAAGGTTACGTACAGAGAGTGGAGAGAGAAAGTGATATCTGTTTTACCTCTGGAAGAAGCTTTGAAAACCCAGAACAGTTCTATGCCCATTCTTCTTCTTCTTCTTCAATTTTTCTTCGGGGAGACGACAGTGGGCGATTCCATACGCGTTTTCTTCCGGATATTGAGGAACTTCAACAATCAGCTGCTGCTATTGCTGCTTTTCATCAAGATGATGCTGTTGATTTAAGCCCAAGCTCTGTTTTCAGTTTAAAATCGACCCACAATACAGCTTTTCCAATCTACCTACCATACGGGAATACGGATGTGGGTTCAATAGGAAGAACAGGGTATTTGGACACAGGACAGGAATTGATGCGGTTGAAGAGGCTGGCTCCGCCGCAGTCGGTGGCGGTGACGGTGGCAGCTTCGTCATCGTTGGGAAACGGGAGCTTTGAGAACTGGGGAGAGTCAGCCATGGCAGATAATAGCCAGCAGACTGACACTTCTACAGACATCGACACTGATGAACGAAACCAGTTTCAAGGAGCTGCACATGGAGCTCTCATGGCGGTGGACTCCATGGATCAATCAAAACCAAAATCTGCAGATCAGAAGACTCTTCGTAGACTTGCTCAGAATCGAGAAGCAGCCAGGAAGAGTCGACTGAGGAAGAAAGCATATGTCCAGCAGCTGGAAAATAGTCGACAGAGGCTTGCACAGCTAGAGCAGGAGCTTCATCGAGCACGCCAACAGGGCATTTTTGTGGCTTCCGGGGCAGGAGATCATTGTGCATCAATGGCAGGAAATGGTGCATTGGCATTTGATCTCGACTATGCACGTTGGCTTGACGAGCATCAACGGCTGATCAATGATTTGAGAGCATCTGCAAATTCTCAGTTGGGGGACGACGAATTGAGATTTCTTGTTGATGGGGTGATGGCACATTATGACGAACTCTTCAAGCTGAAAAGTGTAGGTGCTAAGGCCGATGTATTCCACATTCTTTCGGGCATGTGGAAGACTCCTGCTGAGAGGTGTTTCATGTGGCTGGGAGGATTCCGTTCATCCGAGCTTCTAAAGATAGTAGGGAGCCATTTGGAGCCTCTAACAGATCAGCAGTTGATGGGTATCTGCAATTTGCAGCAATCTTCCCAACAAGCTGAAGATGCATTGTCGCAAGGAATTGAAGCTTTGCAACAATCTCTTGTAGAAACTCTTTCCACTGCTTCTTTAGGTCCAGCCAGTTCAGGAAATGTTGCTGATTACATGGGCCAAATGGCAATCGCGATGAGCAAGCTAACAACGCTCGAGAACTTTCTACATCAGGCGGATCTTCTGAGGCAGCAAACACTCCAACAGATGCATCGGATATTAACTACTCGTCAAGCTGCACGAGCGCTTCTTGTGATCAGCGATTACATTTCACGTCTTCGAGCTCTCAGTTCTCTGTGGTTAGCACGGCCGAGAGACTGA 1581 46.81 MFNNGLSLNAIVSLCKVEEEEEEKGKDEKRFENGGLDVGDRNEGYVQRVERESDICFTSGRSFENPEQFYAHSSSSSSIFLRGDDSGRFHTRFLPDIEELQQSAAAIAAFHQDDAVDLSPSSVFSLKSTHNTAFPIYLPYGNTDVGSIGRTGYLDTGQELMRLKRLAPPQSVAVTVAASSSLGNGSFENWGESAMADNSQQTDTSTDIDTDERNQFQGAAHGALMAVDSMDQSKPKSADQKTLRRLAQNREAARKSRLRKKAYVQQLENSRQRLAQLEQELHRARQQGIFVASGAGDHCASMAGNGALAFDLDYARWLDEHQRLINDLRASANSQLGDDELRFLVDGVMAHYDELFKLKSVGAKADVFHILSGMWKTPAERCFMWLGGFRSSELLKIVGSHLEPLTDQQLMGICNLQQSSQQAEDALSQGIEALQQSLVETLSTASLGPASSGNVADYMGQMAIAMSKLTTLENFLHQADLLRQQTLQQMHRILTTRQAARALLVISDYISRLRALSSLWLARPRD 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 16299750 16303232 + ClCG08G005150.2 Cla08g00534 278189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00534 526 PANTHER TRANSCRIPTION FACTOR PERIANTHIA 110 526 - -
Cla08g00534 526 PANTHER TRANSCRIPTION FACTOR TGA9 110 526 - -
Cla08g00534 526 Gene3D - 240 289 - -
Cla08g00534 526 SMART brlzneu 237 308 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 239 283 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 244 259 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 Pfam Seed dormancy control 325 398 IPR025422 GO:0006351|GO:0043565
Cla08g00534 526 SUPERFAMILY Leucine zipper domain 241 284 IPR046347 GO:0003700|GO:0006355
Cla08g00534 526 ProSiteProfiles DOG1 domain profile. 307 523 IPR025422 GO:0006351|GO:0043565
Cla08g00534 526 Coils Coil 260 287 - -
Cla08g00534 526 Pfam bZIP transcription factor 240 280 IPR004827 GO:0003700|GO:0006355
Cla08g00534 526 CDD bZIP_HBP1b-like 241 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00534 Cla-Chr8:16299750 Cla08g01072 Cla-Chr8:23407805 2.12E-18 dispersed
Cla11g01696 Cla-Chr11:30558671 Cla08g00534 Cla-Chr8:16299750 3.82E-18 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61526 PF14144 DOG1 2.20E-29 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00534 K14431 - csv:101210308 832.017