Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00563 ATGAAGGCAGCTGTTGAGCAATCCACTCCCGAGAGGAACGATGATGGCGATAAGGAGAAGAAGAAGAAACGCCGATCCAATCGCCGATCTAAGCAGAACGCCTCTCTTACCACTTCAGAGTGCATGGAAAATGGTAGAATAGATGCTAACTTAACATCATCCTCAAATTCTTCTTCTTTGACACAACAGGCATATCAATCAAATCATCAAATAGAGCATGGTTTGACCAGAAAAAATAAGATTGCCTTTAGTTCTTTTCCCCCTCTGCATATTAGTGAACAAGCAGAATTATCTGCGTCGCAAAATTCGATCAATCAAAATCTTCATTCATTGAATGCTGGCGGAAGGATTATAAAACCATGTCCTGAACAGATTGCCTGTGGAAGGAATTCAGGGATATCTTTAAACCAGCATTCACCTCCTGCTGATGTAACTGAAAATAACACACAAAGGAAGTATTTTCCTTCACACTGGTCCATGGATGATGTCAATGAAGGACTACAGAAAGGGGACATATTTAAAGCTTTATTTCGTGTTAATGCCCACAATAGACTTGAGGCCTATTGTAAAATTGAAGGGCTACCAGTTGATGTTTTGATAAATGGAATTGCATCTCAGAACAGAGCTAAGCTTCCCAATTCTGTGACTTCCCCTACAAATGAAAATGTAGCAAGTCGTGTTTTGGCTGCTGTAGAATTGCAAGTGGAAGGAGACATAGTTGCTATTAAGATGGATCCTTTAACGTCATGGACTAGGATGAAGGGCACTAATGAGACCCATAACAGTATGCATGCAATGGAAGATACTAGCATACCTGCCGAGGCGACCGAAAAGGACAGCCATAATTGTAAAGGCAAGAATAAAGTTGATGCCGATGTTAAGTCTGAAAGTTTTAGGAGTTCCTCTTTATCTGATAAGAGGTGTCGTAATGAGGTCAAAGTTTTGGATGGAACTGCTTGTGATGATCTTTTATCAAACTATGAGCAATGTGATGTAAACCAGTCATCAGTTGTGGATACTTCCCAAGAACATTGTTCTAGTAATCAAGATGATGTGTCTAAGGCCATCGGGAGGATCTGTGCAGTGATTAATTTATATCCTGGAAAAAGACCGACTGGCAGGGTAGTATCCATCCTAGAGAAGTCTAGACTGCGAGAGACTATTGTTGGCCATCTTTATGTCAAGAAGTTCCTTTCCTTCCAGGAGATTTATATGAAAGAGAATACAAAATCTTGTTTATTGCCATCGCATAATTGTGGATATGTCCAGTTGATGCCCAATGATGCAAGATTCCCTATAATGATGGTTCTTGCAGGAGATTTACCTGACTGCATTAAGAAGAGATTGGATAATGGTGATGTAACGGTTGAAAGTGAGCTGGTGGCTGCTCGAATTCATGAATGGGTTAAGGAGAGTTCAGCTCCACGTGCACATGTCTTGCATGTTTTAGGACGGGGGAGCGAAGTAGAGTCTCAAATTGATGCTATTTTGTTTGAAAATGCAATTCGTACGTGTGAATTCTCTCATGAATCACTGTCTTGCATCCCTCATACCCCTTGGAAGATCCCAGAAGAGGAACTTCAATGCAGAAGAGATATAAGAAATTTATGTATATTTACTATTGATCCTTCCTCTGCCTCGGATCTTGATGATGCTTTATCGGTTCAAAAATTAGCCAATGGCATCTTCAGAGTTGGTATTCATATTGCTGACGTATCACATTTTGTATTGCCAGACACTGCCTTAGATAAGGAAGCTCAAATCCGATCAACGAGTGTTTATCTTTTGCAGCGCAAGATACCAATGTTGCCACCACTACTGTCTGAGAATATAGGTTCACTTAACCCTGGAGTGGATAGACTTGCGTTTTCATTGGTTTTGGACATAAATAACTGTGGAGATGTTAAAGATTGTTGGATTGGACGTACTGTGATAAGCTCTTGTTGCAAACTCTCATATGAACATGCTCAGGATATTATTGATGGATTAATTGATTCTGATAGTTCAAAGATTTTAGGGAATAATTGTCCCCAGTTGCATGGTCAGTTTACATGGCATGATGTCATTTCATCTGTTAAACTTCTTTATGAAATTTCAAAAACTCTGAAGGAGAAGAGATTTAGAGATGGGGCTTTGCGGCTTGAGAATTCCAAAATAATTTATTTATATGACGAATATGGAATTCCATATGATAGTACGTTTTATGAGCAAAAGGATTCAAATTTTCTTGTTGAAGAGTTTATGCTTTTGGCAAACACAACTGTTGCCGAAGTTATATCCAGAACTTTTCCTGACGGTGCATTACTGAGAAGGCATCCAGAACCTATATTGAGGAAACTCAGAGAATTTGAGTCATTTTGTTCTAAGCATGGTTTTGAACTTGACACATCCTCTTCAGTCCAGTTCCAACAGTCATTAGAGCAGATAAGAATAAAACTTCATGATGATCCTTTGCTGTTCGATATTCTCATATCCTATGCTACAAGGCCCATGCAATTAGCAACTTATTTCTGTAGTGGAGAGTTAAAAGATGGTGAAAAGGGGAGTCATTATGCTCTGGCGGTCCCTTTGTACACACATTTCACTTCACCATTGCGACGGTATCCTGATATTGTAGTCCATCGCACACTTGCAGCAGCAATTGAGGCCGAGAAGTTGTATTTGAAGCACCAAGGAATCATACAGAAAGTTAATAGTGATGAGCAGATAAGATGTTTTACTGGGATTTATTTTGACAAAGATGCTGCTGACTCCTTAGAAGGTAGAGAAGCATTGTCATCTGCAGCGTTGAGGCATGGTGTTCCATGCTCGAAATTACTTTCAGATGTTGCTCTGCACTGCAATAACAGAAAATTGGCTAGTAAGCATGTTGCGGATGGTTGTGATAAGCTCTACATGTGGGCTCTTTTGAAGAAAAAAAAGATTTTGTTCTCAGATGCGAGGGTATTGGGCCTTGGTCCAAGATTTATGTCTGTGTATATACAGAAGCTGGCTATTGAGCGAAGAATATACTATGACGAAGTAGAAGGTTTGGCAGTTGAATGGCTTGATGCTACATCTACACTGGTGCTTAGTTTTTTTGGTACTAGGCGCTCACATAGGAGTAGAGGTTCAGTTAAGTGGAAGGCATTGGAAGACGTCGCACTAGTTGTTTCTCCTTGCGACCAGAATGTTGAACAAAGGACACCGGGAGTGAGTCCTAGTGAGTTGGTTGGAGCAAGCACAGATATTGCTGCTGTGGAACATGAGCCCAATTTGAAATCTCATGTTTCAGATACTGGAGTTGACCCTGCAGTTTTCCCCCTCACGGTAAGGCTCCTTTCGACAATACCAGTAGCACTTCATGCAGTTGGTGGGAATGATGGACCCATCGACATCGGAGTTAGGCTATACATGAGCTCATATTTAAGGTAA 3414 40.48 MKAAVEQSTPERNDDGDKEKKKKRRSNRRSKQNASLTTSECMENGRIDANLTSSSNSSSLTQQAYQSNHQIEHGLTRKNKIAFSSFPPLHISEQAELSASQNSINQNLHSLNAGGRIIKPCPEQIACGRNSGISLNQHSPPADVTENNTQRKYFPSHWSMDDVNEGLQKGDIFKALFRVNAHNRLEAYCKIEGLPVDVLINGIASQNRAKLPNSVTSPTNENVASRVLAAVELQVEGDIVAIKMDPLTSWTRMKGTNETHNSMHAMEDTSIPAEATEKDSHNCKGKNKVDADVKSESFRSSSLSDKRCRNEVKVLDGTACDDLLSNYEQCDVNQSSVVDTSQEHCSSNQDDVSKAIGRICAVINLYPGKRPTGRVVSILEKSRLRETIVGHLYVKKFLSFQEIYMKENTKSCLLPSHNCGYVQLMPNDARFPIMMVLAGDLPDCIKKRLDNGDVTVESELVAARIHEWVKESSAPRAHVLHVLGRGSEVESQIDAILFENAIRTCEFSHESLSCIPHTPWKIPEEELQCRRDIRNLCIFTIDPSSASDLDDALSVQKLANGIFRVGIHIADVSHFVLPDTALDKEAQIRSTSVYLLQRKIPMLPPLLSENIGSLNPGVDRLAFSLVLDINNCGDVKDCWIGRTVISSCCKLSYEHAQDIIDGLIDSDSSKILGNNCPQLHGQFTWHDVISSVKLLYEISKTLKEKRFRDGALRLENSKIIYLYDEYGIPYDSTFYEQKDSNFLVEEFMLLANTTVAEVISRTFPDGALLRRHPEPILRKLREFESFCSKHGFELDTSSSVQFQQSLEQIRIKLHDDPLLFDILISYATRPMQLATYFCSGELKDGEKGSHYALAVPLYTHFTSPLRRYPDIVVHRTLAAAIEAEKLYLKHQGIIQKVNSDEQIRCFTGIYFDKDAADSLEGREALSSAALRHGVPCSKLLSDVALHCNNRKLASKHVADGCDKLYMWALLKKKKILFSDARVLGLGPRFMSVYIQKLAIERRIYYDEVEGLAVEWLDATSTLVLSFFGTRRSHRSRGSVKWKALEDVALVVSPCDQNVEQRTPGVSPSELVGASTDIAAVEHEPNLKSHVSDTGVDPAVFPLTVRLLSTIPVALHAVGGNDGPIDIGVRLYMSSYLR 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17172193 17178491 + ClCG08G005400.1 Cla08g00563 278218

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00563 1137 Gene3D - 142 212 - -
Cla08g00563 1137 Gene3D - 407 488 - -
Cla08g00563 1137 PANTHER DIS3-LIKE EXONUCLEASE 2 33 1135 - -
Cla08g00563 1137 SMART RNB_2 530 883 IPR001900 GO:0003723|GO:0004540
Cla08g00563 1137 SUPERFAMILY Nucleic acid-binding proteins 491 972 IPR012340 -
Cla08g00563 1137 Pfam Dis3-like cold-shock domain 2 (CSD2) 421 500 IPR041505 -
Cla08g00563 1137 MobiDBLite consensus disorder prediction 1 68 - -
Cla08g00563 1137 SUPERFAMILY Nucleic acid-binding proteins 372 503 IPR012340 -
Cla08g00563 1137 MobiDBLite consensus disorder prediction 7 21 - -
Cla08g00563 1137 Hamap DIS3-like exonuclease 2 [DIS3L2]. 10 1112 IPR028591 GO:0000175|GO:0034427
Cla08g00563 1137 SUPERFAMILY Nucleic acid-binding proteins 151 209 IPR012340 -
Cla08g00563 1137 Pfam RNB domain 530 881 IPR001900 GO:0003723|GO:0004540
Cla08g00563 1137 MobiDBLite consensus disorder prediction 31 68 - -
Cla08g00563 1137 ProSitePatterns Ribonuclease II family signature. 850 874 IPR022966 -
Cla08g00563 1137 PANTHER RIBONUCLEASE 33 1135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00563 K18758 DIS3L2; DIS3-like exonuclease 2 [EC:3.1.13.-] - csv:101205097 1888.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00580 Cla-Chr2:6256140 Cla08g00563 Cla-Chr8:17172193 1.27E-56 dispersed
Cla04g00802 Cla-Chr4:23040278 Cla08g00563 Cla-Chr8:17172193 2.59E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g297 . . . . . . . . Cmo04g02458 Cmo15g00709 . . . . Sed11g2304 . . Bhi04g02509 Tan11g0076 Cmetu03g1361 . . . Lcy10g2336 Cla08g00563 Cam08g0980 . Cco08g0679 Clacu08g0688 . Cre08g0502 . . Cone17ag1271 . . . . . Blo17g00182 . . Bda01g01418 Bpe02g01633 Bpe14g00376 Bma01g00828 Bma02g00223 . . . . . Car04g02276 Car15g00639 Cpe01g02038 . . . . . . . . . . . . . . . Lsi08g00412 . Chy03g00355 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004396 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00563 Cla_Chr08 FPKM 32.451935 33.131378 70.591408 69.763313 15.776556 15.292472 15.556327 0.0 0.0 0.0