Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00565 ATGGACGGCCAGAAAAATCAGGCGAAACTTACGAGAACTCAATCTTCGCTTCTTCGTTCATCTCCCACTGTCCGTTCGATTCAGAGTCTGTCTTCGGTTACGGAGGAGGATGTAATCGAACACGATAATGACGACCGGAATCGGAAGAACAAGAAGCTTCGTCGGAGCCGGTCATCGGCGAGGAATTGGTCGATGTGTTTTGCTAACCCTGTTTTGGGTTTGGCTTTGCTTACTTCTTTCACGCTCTTCTCCATTTCTTGCTTCGGTTTCTTCTTTTATGCACGTAAGGAAGAGATTGCGACTTCGGAGAATCTTCTACTGGCGTTGGTTTTCGTTGCGATTGCGCTTTTCTTCGCCAACAAAAACAAGGGTTTAATCCAACAGACGGTTTCGATTTTGAAACAGTCATGGGATGAAAATGCGAGACGGTTTGGGTTTTCGAGTAGCAATGCGAAGCCAGTGAAATGGTTTATTGGTAGTCCAAACCCCAATTTGGAAGCCAAGAAGAAGAGACAAATTATCAGAGAAGGGGTCGAGTTCTACAGTAATGGGGATTTCTACGAAGGTGAGTTTCATAAAGGGAAGAGCAATGGAAGTGGGGTTTACAATTACTTCGCGAATGGAAGATATGAAGGGGATTGGATCGACGGCCGATACGATGGGTATGGAATTGAAAGCTGGGCGAGAGGAAGCCGGTACAGAGGCCAATACAGGCAGGGTTTAAGGCATGGATTTGGGGTTTATAGATTCTACACAGGGGATTCCTATGCAGGGGAATGGTATAATGGACAGAGCCATGGGATTGGAATACAAACCTGCTCTGATGGCAGTTGTTATGTGGGCGAGTTCAAGCGTGGCGCCAAGCACGGCCTTGGCTGTTACCATTTTAGGAATGGAGATAGATATGCAGGGGAGTATTTTGGGGATAAAATACATGGATTTGGTGTATATCACTTTGCCAATGGGCATTGTTACGAAGGATCATGGCATGAAGGGCAGAAACAAGGTTTCGGTATGTACACGTTCCGAAACATTGAGAGTCGATGTGGCGAATGGGATGCAGGACATCTCAAGAACCCTCTTCCCCCTCTTACTGATTTAGTACTTGGAGCAGTTCAGGCTGCTCGGAAGACAGCAGAGAATGCGATTAAGATCGAGCCGGTGGACGAGGAGGTGAACAAGGCAGTAGTAGCAGCAAATAGAGCGGCCAATGCTGCTAGAGTTGCTGCAGTGAAAGCTGTTCAAAACAGAATGAAAGGGGAGTTTTGTGATATAGGTGTTTAA 1284 46.5 MDGQKNQAKLTRTQSSLLRSSPTVRSIQSLSSVTEEDVIEHDNDDRNRKNKKLRRSRSSARNWSMCFANPVLGLALLTSFTLFSISCFGFFFYARKEEIATSENLLLALVFVAIALFFANKNKGLIQQTVSILKQSWDENARRFGFSSSNAKPVKWFIGSPNPNLEAKKKRQIIREGVEFYSNGDFYEGEFHKGKSNGSGVYNYFANGRYEGDWIDGRYDGYGIESWARGSRYRGQYRQGLRHGFGVYRFYTGDSYAGEWYNGQSHGIGIQTCSDGSCYVGEFKRGAKHGLGCYHFRNGDRYAGEYFGDKIHGFGVYHFANGHCYEGSWHEGQKQGFGMYTFRNIESRCGEWDAGHLKNPLPPLTDLVLGAVQAARKTAENAIKIEPVDEEVNKAVVAANRAANAARVAAVKAVQNRMKGEFCDIGV 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17194425 17196315 - ClCG08G005420.1 Cla08g00565 278220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00565 427 Gene3D - 217 261 - -
Cla08g00565 427 Gene3D - 262 307 - -
Cla08g00565 427 Gene3D - 308 363 - -
Cla08g00565 427 Gene3D - 174 216 - -
Cla08g00565 427 MobiDBLite consensus disorder prediction 35 49 - -
Cla08g00565 427 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 227 355 - -
Cla08g00565 427 MobiDBLite consensus disorder prediction 1 54 - -
Cla08g00565 427 SMART morn 277 298 IPR003409 -
Cla08g00565 427 SMART morn 208 229 IPR003409 -
Cla08g00565 427 SMART morn 254 275 IPR003409 -
Cla08g00565 427 SMART morn 300 321 IPR003409 -
Cla08g00565 427 SMART morn 323 344 IPR003409 -
Cla08g00565 427 SMART morn 231 252 IPR003409 -
Cla08g00565 427 SMART morn 185 207 IPR003409 -
Cla08g00565 427 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 21 420 - -
Cla08g00565 427 PANTHER HISTONE H3 K4-SPECIFIC METHYLTRANSFERASE SET7/9 FAMILY PROTEIN 21 420 - -
Cla08g00565 427 MobiDBLite consensus disorder prediction 1 34 - -
Cla08g00565 427 Pfam MORN repeat 187 203 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 302 323 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 233 254 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 210 232 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 256 277 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 279 301 IPR003409 -
Cla08g00565 427 Pfam MORN repeat 325 344 IPR003409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00565 - - - csv:101219961 739.954
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00565 Cla11g01525 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00565 Cla-Chr8:17194425 Cla10g00203 Cla-Chr10:2352105 6.57E-107 dispersed
Cla06g00790 Cla-Chr6:10905937 Cla08g00565 Cla-Chr8:17194425 1.03E-109 transposed
Cla11g01525 Cla-Chr11:28891953 Cla08g00565 Cla-Chr8:17194425 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g292 . Blo12g00674 . Bda03g00530 Bpe02g00076 Bpe04g00484 . . Cmo04g02460 Cmo15g00707 . Cma09g00805 . . . Cpe06g00640 . . . . . . . . Cla08g00565 Cam08g0982 Cec08g0571 Cco08g0681 Clacu08g0690 . Cre08g0504 Cone4ag1389 Cone7ag1546 Cone17ag1274 Cone20ag0452 Lsi04g02379 Csa04g01814 . . . . Bda11g00744 . . . . . . . Cmo09g00798 . . Car04g02278 Car09g00721 Cpe01g02040 . Bhi09g02656 . . . Hepe01g2270 Mch11g0819 . Cla11g01525 Cam11g1585 Cec11g1614 Cco11g1615 Clacu11g1742 Cmu11g1560 Cre11g1976 Lsi08g00414 . Chy07g00660 Cme07g00868
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001672 2 2 3 1 2 1 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 4 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00565 Cla_Chr08 FPKM 0.190157 0.67146 0.0 0.617276 0.0 0.0 0.0 0.0 0.0 0.0