Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00576 ATGGTGAAGAAGGAATTAGCAAATGATGACATTCATTCCACAACACTCTCAACAAGTAAAAAGAAATACAAGGGAGTAAGAATGAGAAGCTGGGGTTCATGGGTTTCTGAAATTAGAGCTCCAAATCAAAAGACAAGAATATGGTTAGGTTCATATTCGACGGCGGAGGCCGCCGCCAGAGCTTACGACGCCGCCCTCTTGTGCCTTAAAGGCTCCTCTGCCAATCTAAATTTTCCAATCTCTTCTTCTTCCTTTGCTCATTTTCACAATTTTCTCTCTTCAAATCATGATGATAATAATGTTATGTCTCCAAAGTCCATCCAAAGAGTTGCGGCCGAAGCTGCAGCTAACACCGCCTTTTTTGATGGCAATGTCGACAATAATACGACGGGATCTAACGATGTTCTGCCATCGTCGCCACTGCCTTCCTCCTCCTCCTCTTCTTCTTCTTCCTCTGTCTCGTCGACGTCGAATAATGATTCGTTTATGATGATGGAGCCGTCGTGGTTCAACTTTGATGACATACTCTCCCCTAAGTACGTTGGGCAAATGATGGATGGAACTCTTTTTGATCCACCCATTATTGATGATTTTTATGAAGAAAGTGATATTCGTTTATGGAGCTTCTGTTGA 633 42.81 MVKKELANDDIHSTTLSTSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPISSSSFAHFHNFLSSNHDDNNVMSPKSIQRVAAEAAANTAFFDGNVDNNTTGSNDVLPSSPLPSSSSSSSSSSVSSTSNNDSFMMMEPSWFNFDDILSPKYVGQMMDGTLFDPPIIDDFYEESDIRLWSFC 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17460243 17460875 - ClCG08G005530.1 Cla08g00576 278231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00576 210 CDD AP2 21 81 IPR001471 GO:0003700|GO:0006355
Cla08g00576 210 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Cla08g00576 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 15 210 - -
Cla08g00576 210 Gene3D AP2/ERF domain 21 81 IPR036955 GO:0003700|GO:0006355
Cla08g00576 210 MobiDBLite consensus disorder prediction 131 158 - -
Cla08g00576 210 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Cla08g00576 210 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Cla08g00576 210 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Cla08g00576 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 210 - -
Cla08g00576 210 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Cla08g00576 210 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00576 Cla-Chr8:17460243 Cla03g01425 Cla-Chr3:29849775 7.53E-27 dispersed
Cla11g01528 Cla-Chr11:28919021 Cla08g00576 Cla-Chr8:17460243 8.75E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61530 PF00847 AP2 4.00E-12 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00576 - - bhj:120076439 346.28