Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00578 ATGAAGTTTCTCATATTGCTCTCCCTTTTATTATCACTTCTCACTAAGCTAAAGATCAACATGGGTGAGAATTCTATTGTGAGTAAGTTGAAGCCTTATATTCTAGTGGTGAGCCTACAATTTGGAATTGCAGGCATATATGTAATATGCATGGCCACTCTCACAAAAGGCATGAGTCGTTATGTTTTGATCGTGTATCGAAACACTATTGCTGCTCTCTTTCTCGCTCCGTTCGCACTAATCTTTGAAAGGAAAACAAGACCAAAGATGACACTCCCTGTCGCTTTACAAATCATGGTCTTAGGTTTTCTAGAACCAGTTGTGGATCAAGGGTTTGGTTATCTAGGAATGATGTACACGTCAGCATCATTTGCATCGGCCATCATGAATGCTGTGCCTTCTGTTACCTTTATCATTGCAGTCATTTTTCGGGTGGAGCATTTAAATATAAAACAAGTACGAGGGGTAGCCAAAGTAATTGGCACTTTAGTGACCTTTGCTGGAGCTTTGGTTATGACACTTTACAAAGGCCCAATTCTTGAATTCTTTTGGACACAAAAAACCAACCACCATGTTAACAGCGGCGCCGCCGCAGCCAATCAGCACTGGGTGGCCGGAACTTTGTTCATCCTTCTGGGCTGCGTGTCTTGGTCTTGTTTCTACATATTACAATCTATAACAGTGAAGAGATACCCAGCGGAGCTGTCTCTGTCGGCATTGATATGCTTGGCCGGTGCACTTCAAAGCACAGTGATAGCAGTAGCTATAGAGCATCGTCCTAGCGCATGGGCTGTGGGTTGGGACTCTAGGCTTCTAGCTCCTCTCTATACGGGAATAGTTGGATCAGGAATTGCATATTACTTTCAAGCTATAGTTATGAAGACAAGAGGTCCTGTATTTGTGACGGCTTTCAACCCTTTATGTATGATTGTCGTCACTATTATCTCCTCTATTGTTCTCGCCGAGAAGATTCATCTTGGAAGCGTGATTGGAGCCATTATCATCGCACTTGGGCTTTATTCAGTCGTTTGGGGGAAAAGCAAGGATTATTCCACTGCCGGCAACCCCCAAAAGCCTAACGCCGCCGTGTCGGAGCTTCCAATTACTGCCTCTCAACCCCCAACCGAACAAGATGTTCATCTTCAACCTCCAAAATGA 1158 44.04 MKFLILLSLLLSLLTKLKINMGENSIVSKLKPYILVVSLQFGIAGIYVICMATLTKGMSRYVLIVYRNTIAALFLAPFALIFERKTRPKMTLPVALQIMVLGFLEPVVDQGFGYLGMMYTSASFASAIMNAVPSVTFIIAVIFRVEHLNIKQVRGVAKVIGTLVTFAGALVMTLYKGPILEFFWTQKTNHHVNSGAAAANQHWVAGTLFILLGCVSWSCFYILQSITVKRYPAELSLSALICLAGALQSTVIAVAIEHRPSAWAVGWDSRLLAPLYTGIVGSGIAYYFQAIVMKTRGPVFVTAFNPLCMIVVTIISSIVLAEKIHLGSVIGAIIIALGLYSVVWGKSKDYSTAGNPQKPNAAVSELPITASQPPTEQDVHLQPPK 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17571583 17578384 + ClCG08G005550.1 Cla08g00578 278233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00578 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 347 - -
Cla08g00578 385 SUPERFAMILY Multidrug resistance efflux transporter EmrE 66 175 - -
Cla08g00578 385 PANTHER WAT1-RELATED PROTEIN 29 360 - -
Cla08g00578 385 Pfam EamA-like transporter family 206 343 IPR000620 GO:0016020|GO:0016021
Cla08g00578 385 Pfam EamA-like transporter family 43 172 IPR000620 GO:0016020|GO:0016021
Cla08g00578 385 PANTHER WAT1-RELATED PROTEIN 29 360 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00578 Cla-Chr8:17571583 Cla11g01284 Cla-Chr11:26371717 9.60E-118 dispersed
Cla11g01531 Cla-Chr11:28947910 Cla08g00578 Cla-Chr8:17571583 1.19E-136 wgd
Cla06g00834 Cla-Chr6:12162020 Cla08g00578 Cla-Chr8:17571583 2.65E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00578 - - csv:101217521 667.922