Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00585 ATGCCAAGTACGGAATCGTTTCTGAGGCAGATTAGTAGAAGGGGGGAGGGTTCAAGATCAACTTCTAGGAGGTGGGGTGGGGAGTTTAGGAGAAGTGAAGTTGAGGAGCGTGTTACTGAGGGTAGCCATTGGAATCAGAAGATGGAGGGGGGTGTTAATAATATGTATGGGATCGACAATGGTGGGATGTCAAGAAGGAAGAGGGTGATGGTGGTGGTGGATCACACTTCTCAATCTAACCATGCAACTATGTGGGCTCTCACTCATGTGGCTAACAAGGGCGATGTTCTTACTCTTCTTCATGTTATCACCAACTCCTCTATCGACTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCCTCCTCTTTCTGTGCTACCTCTCTTGGTTCTCTCTGCAAGGCTTCTAGACCTGAGGTAGAAGTGGAAGTGCTGATAGTAGAGGGGCCGAAGCTGGCCACAGTGATAAACCAAGTCAAGAAGCTGGAGGTGTCGGTGCTGGTTGTGGGACAGAGAAGGCCATCCTTTCTCGGCTGCTTTTGTGGGAGTGGTGGGGCGGGAGATTTGGTGGAACAGTGCATAAACAACGCAGAGTGCTTGACCATTGGAGTTAGGAAGCAGAGCAGAGACATGGGTGGGTATGTAATCAACACCAGATGGCAGAAAAATTTCTGGCTCCTCGCTTAG 687 49.2 MPSTESFLRQISRRGEGSRSTSRRWGGEFRRSEVEERVTEGSHWNQKMEGGVNNMYGIDNGGMSRRKRVMVVVDHTSQSNHATMWALTHVANKGDVLTLLHVITNSSIDSSSSSSSSSSSSSSFCATSLGSLCKASRPEVEVEVLIVEGPKLATVINQVKKLEVSVLVVGQRRPSFLGCFCGSGGAGDLVEQCINNAECLTIGVRKQSRDMGGYVINTRWQKNFWLLA 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17672212 17673631 + ClCG08G005620.1 Cla08g00585 278240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00585 228 CDD USP_Like 68 199 - -
Cla08g00585 228 MobiDBLite consensus disorder prediction 1 15 - -
Cla08g00585 228 Pfam Universal stress protein family 66 201 IPR006016 -
Cla08g00585 228 PANTHER - 1 228 - -
Cla08g00585 228 MobiDBLite consensus disorder prediction 1 27 - -
Cla08g00585 228 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 228 - -
Cla08g00585 228 Gene3D HUPs 65 212 IPR014729 -
Cla08g00585 228 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 67 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00585 - - - cmo:103504053 380.178
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00585 Cla11g01533 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla04g01137 Cla-Chr4:26564300 Cla08g00585 Cla-Chr8:17672212 2.56E-07 dispersed
Cla05g00402 Cla-Chr5:3651768 Cla08g00585 Cla-Chr8:17672212 2.94E-09 dispersed
Cla05g02384 Cla-Chr5:35389710 Cla08g00585 Cla-Chr8:17672212 1.92E-25 dispersed
Cla08g00585 Cla-Chr8:17672212 Cla04g01112 Cla-Chr4:26343060 2.31E-08 dispersed
Cla11g01533 Cla-Chr11:28973990 Cla08g00585 Cla-Chr8:17672212 2.11E-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g275 . Blo12g00670 . . Bpe02g00071 Bpe04g00489 . Bma01g02647 Cmo04g02468 . . Cma09g00679 . . Sed05g2350 Cpe06g00528 . Bhi04g01919 Tan11g1284 Cmetu03g0412 . Hepe02g2276 . Lcy10g1222 Cla08g00585 Cam08g1000 Cec08g0589 Cco08g0699 Clacu08g0709 . Cre08g0520 Cone4ag1402 Cone7ag1537 Cone17ag1279 Cone20ag0447 Lsi04g02387 Csa04g01805 . Cme03g00567 . . Bda11g00741 Bda01g01424 Bpe02g01638 . Bma01g00822 . . . Cmo09g00659 . . Car04g02285 Car09g00598 . . Bhi09g02669 . . . Hepe01g2279 Mch11g0827 . Cla11g01533 Cam11g1592 Cec11g1621 Cco11g1622 Clacu11g1751 Cmu11g1567 Cre11g1983 Lsi08g00431 . Chy07g00648 Cme07g00857
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001750 2 2 1 3 3 1 4 2 1 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 3 2 2 3 2 1 67
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00585 Cla_Chr08 FPKM 111.053665 117.286255 80.72625 80.220947 94.769714 97.479469 93.016815 88.983337 89.53363 86.890503