Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00589 ATGGCGGGAAGGACAGTGTTGAAGGAGAAGAGCAGGGCAGCAAGCTTCTTCTCCGCGACATTAGTGCTTTGGTCAGTCTCTCTATGGTTCGAAATTCTATTCGACCGGCGCTTCGAGCTGCTCTACGTCGTATTCGGAGCTCTGTTCTACCAATCCGCCAATTCGGCCATTCGATTTCTTGTTTCCAAGGATCCTCTCTTAGTCAACACCTCCGTCTCTCTCCTTCATTCCACTATCACCTCTGCTTCAGTGCTGTTTGTTTTGGTGAATCGGTGGCTGAGCTATGGTTCGGAGGGGATGTTTGAGCATTCACAATTGTTTGGAGGAACATGGCCGTGGGCTTATGCTGCTTTGTGCTTCTCATGTGGTTATTTTGCGTATGATCAGTGGGATATGCTGCAATACCAATTATACAGTGGCTGGATCCCTGCGATCTTAGTTCATCATCTGGTTCTTCTCATTTGCTTTACGCTTGCTTTGTATAGGAATGTCACCATCAATTATCTCATTCTCACTCTCATTTGCGAGATGCATTCTATTTTTCTCCACGTAAGGCGATTACGAAGGATGGCAGGTGTTCGTGACGCTAAGAGCGTTATCGTGAAAGTCGAATGGATTCTCAACTGGCTAACATTCGTTTTCGCAAGGTTTGTTCCACACATTCTCATTACTGCGAAGCTCATCATGGATGCTTCCAAGTTTGATAAAGGCGTCGAGCTGCCGCTTGCACTGTCTGGGATGGCTGGCATGAACCTGCTGAATGCTTTGCTTGGCATTGATCTCTTAAACGCCGTAAGGAAAGAGAGTAATTACCAGAAAACTGATCAATCTCATCATGAATGA 843 46.14 MAGRTVLKEKSRAASFFSATLVLWSVSLWFEILFDRRFELLYVVFGALFYQSANSAIRFLVSKDPLLVNTSVSLLHSTITSASVLFVLVNRWLSYGSEGMFEHSQLFGGTWPWAYAALCFSCGYFAYDQWDMLQYQLYSGWIPAILVHHLVLLICFTLALYRNVTINYLILTLICEMHSIFLHVRRLRRMAGVRDAKSVIVKVEWILNWLTFVFARFVPHILITAKLIMDASKFDKGVELPLALSGMAGMNLLNALLGIDLLNAVRKESNYQKTDQSHHE 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17735187 17738983 - ClCG08G005670.2 Cla08g00589 278244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00589 280 PANTHER CT120 PROTEIN 16 277 - -
Cla08g00589 280 Pfam TLC domain 69 255 IPR006634 GO:0016021
Cla08g00589 280 SMART lag1_27 62 267 IPR006634 GO:0016021
Cla08g00589 280 PANTHER TLC DOMAIN-CONTAINING PROTEIN FLD-1 16 277 - -
Cla08g00589 280 ProSiteProfiles TLC domain profile. 62 270 IPR006634 GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00589 - - - bhj:120075350 538.11
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g261 . . . . . . . . . Cmo15g00691 . . . . Sed01g3125 . . Bhi04g01915 Tan11g1277 Cmetu03g1464 . Hepe02g2272 . Lcy10g1225 Cla08g00589 Cam08g1004 Cec08g0594 Cco08g0703 Clacu08g0713 . Cre08g0524 . Cone7ag1529 . . . . . Cme03g00559 . . . Bda01g01428 Bpe02g01642 . . . . . . . . . Car15g00624 . . . . . . . . . . . . . . . . Lsi08g00435 . Chy03g00800 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011858 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00589 Cla_Chr08 FPKM 9.720478 6.75575 7.308924 7.795427 10.387052 10.216692 10.120475 8.54034 9.290889 9.570382