Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00590 ATGGAAGATACTCACTCTCACAATAAAAGAAGCATGTGGATGTTGAGCGTGCCACGTGTAATAACATTCTGCCCACTAATTTCCACGTGGCAGACCATGGAAGGCCAGCTGAGATCGCGGAATACAACCGCCTCTTATCGCCAAAATCCCCAAAATCAAGTCTCTCTTCACCAAAATCCTCATTTCTTCTTCTCTCCCTCTCTCTTTCAACTTCACACTTCAAACGCCATGACCGTCGTAGCAACGGCCGCAGCTCTCTCCTTGCCCATTTCTTTTTCCAAATCTCCGAAGCTCAATTTTAAGAAGAGTGTGAAAGGAGGATTTAGAGTGTTTGCTGTGTTTGGAGAGGAAGGAGCTATAGAGAGGAAGAGTGGGTGGGAAACGATATTTGATGTGGAAGATCCGAGGACAAAGGTTCCTCAATGTAAAGGGAAGTTCTTAGATGTTAATCAAGCTCTTGAAGTGGCTAGATATGACATTCAATACTGTGATTGGCGAGCTCGGCAAGATGTTCTTGCAATCATGCTTCTCCATGAAAAGGTTGTGGAAGTCCTAAATCCTCTAGCCCGTGACTATAAATCTATCGGAACAATGAAGAAAGAGCTTGCCGGATTACAGGACGAATTAGCAGAAGCTCATAGACAGGTTCATATATCTGAAGCACGGGTTGCCACTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTTCATGATAGGCTGTTACAAGACAGAAACACAGCGGAATTGGACAGCCCATCTACCTCGACTCGTACTTCAACACAATCTCATGATTCTGCAAATAGAAGATCACCAAAGAAAAGCTTGAACGTATCAGGACCTGTCGAACCATATCATCCCCGCTTGAAGAACTTCTGGTATCCAGTTGCTTTCTCCAGTGATCTGAAAGATGACATAATGATCCCATTTGATTGTTTTGAAGAACCATGGGTTCTTTTCCGAGGAAAGGATGGGAAACCTGGATGCATACGGAACACATGTGCTCATAGGGCATGCCCTCTTCACCTCGGTTCTGTCAATGACGGCCGAGTCCAGTGTCCTTACCATGGTTGGGAATACTCAACAGATGGCAAATGTGAGAAAATGCCATCAACGCGATTGCTAAATGTGAAAATAAAATCTTTGCCATGTTTCGAGAAAGAAGGAATGATCTGGGTTTGGCCAGGTAATGATCCTCCAGCAGCTAATCTTCCTTCTCTAAAACCTCCTCCTGGTTTTCAAATCCATGCTGAGCTTGTCATTGAAATTCCAGTGGAGCATGGATTACTTCTAGATAACCTTCTAGATCTTGCTCATGCACCTTTTACTCATACTTCCACTTTTGCAAAAGGATGGAGCGTACCCAGCTTGGTGAAATTTTTAACCCCTGCATCTGGGCTCCAAGGATACTGGGACCCTTACCCAATCGACATGGAATTTCGACCACCTTGTATGGTGTTATCAACTATAGGGATCTCCAAGCCAGGAAAACTAGAAGGCCAAAGTACCAGAGAATGCTCAACACATCTTCATCAACTTCATGTTTGCTTACCTTCAACAAGACAGAAGACAAGACTACTGTATAGAATGTCATTGGATTTTGCTCCTGTGTTGAAGCAGATTCCCTTCATGCACTATCTCTGGAGACATTTTGCGGAACAGGTATTGAATGAGGACTTAAGGCTCGTCATTGGTCAGCAAGAAAGAATGCTTAACGGAGCAAATATTTGGAACATGCCAGTTTCTTATGATAAGCTAGGTGTAAGATATAGGCTATGGAGAAATGCAGTAGAAGAAGGAGCAAAACAACTACCCTTCAGCAAATCAACTTGA 1833 43.43 MEDTHSHNKRSMWMLSVPRVITFCPLISTWQTMEGQLRSRNTTASYRQNPQNQVSLHQNPHFFFSPSLFQLHTSNAMTVVATAAALSLPISFSKSPKLNFKKSVKGGFRVFAVFGEEGAIERKSGWETIFDVEDPRTKVPQCKGKFLDVNQALEVARYDIQYCDWRARQDVLAIMLLHEKVVEVLNPLARDYKSIGTMKKELAGLQDELAEAHRQVHISEARVATALDKLAYMEELVHDRLLQDRNTAELDSPSTSTRTSTQSHDSANRRSPKKSLNVSGPVEPYHPRLKNFWYPVAFSSDLKDDIMIPFDCFEEPWVLFRGKDGKPGCIRNTCAHRACPLHLGSVNDGRVQCPYHGWEYSTDGKCEKMPSTRLLNVKIKSLPCFEKEGMIWVWPGNDPPAANLPSLKPPPGFQIHAELVIEIPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPASGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQSTRECSTHLHQLHVCLPSTRQKTRLLYRMSLDFAPVLKQIPFMHYLWRHFAEQVLNEDLRLVIGQQERMLNGANIWNMPVSYDKLGVRYRLWRNAVEEGAKQLPFSKST 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17740332 17743509 + ClCG08G005680.2 Cla08g00590 278245

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00590 610 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 334 356 IPR015881 GO:0005506|GO:0051537
Cla08g00590 610 Pfam Pheophorbide a oxygenase 480 574 IPR013626 GO:0010277
Cla08g00590 610 MobiDBLite consensus disorder prediction 247 266 - -
Cla08g00590 610 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 147 608 - -
Cla08g00590 610 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 293 393 IPR017941 GO:0051537
Cla08g00590 610 Pfam Rieske [2Fe-2S] domain 293 374 IPR017941 GO:0051537
Cla08g00590 610 SUPERFAMILY Bet v1-like 389 597 - -
Cla08g00590 610 Coils Coil 195 222 - -
Cla08g00590 610 Pfam Vanillate O-demethylase oxygenase C-terminal domain 426 450 IPR044043 GO:0016491
Cla08g00590 610 SUPERFAMILY ISP domain 287 396 IPR036922 GO:0051537
Cla08g00590 610 Gene3D - 411 604 - -
Cla08g00590 610 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 147 608 - -
Cla08g00590 610 Gene3D - 287 409 IPR036922 GO:0051537
Cla08g00590 610 CDD Rieske_RO_Alpha_Cao 276 404 - -
Cla08g00590 610 MobiDBLite consensus disorder prediction 244 282 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00590 K13600 CAO; chlorophyllide a oxygenase [EC:1.14.13.122] - csv:101205768 1069.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01660 Cla-Chr5:28268933 Cla08g00590 Cla-Chr8:17740332 3.05E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g260 Blo01g01296 Blo12g01127 Bda01g00654 Bda03g00012 Bpe02g00642 Bpe04g00006 Bma04g00011 Bma01g02071 Cmo04g02472 Cmo15g00690 . . . . . . . Bhi04g01914 . . . Hepe02g2268 . . Cla08g00590 Cam08g1005 Cec08g0595 Cco08g0704 Clacu08g0714 . Cre08g0525 Cone4ag1410 Cone7ag1528 . . . . . Cme03g00556 . . . . . . . . . . . . . Car04g02290 Car15g00623 Cpe01g02051 . . . . . . . . . . . . . . . Lsi08g00436 . Chy03g00799 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005024 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00590 Cla_Chr08 FPKM 12.756219 10.865746 10.542315 10.286967 23.022638 23.042904 26.701889 9.190853 8.828258 7.980803