Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00599 ATGATCTCCTCTGCAAAAATTTTCTCAATTTTCTTCATCGCCATTCACGCCTTCTCACTCTCCTCATCCTCTCCAGTCGGCGGTGATCACGGCGGTTCTCCTCTAATAGCGGGCTGCGGCTTACAACCGCTGCGGATTTCTAATTCTCTCAAGAATAAGAGTATTGGAGCCTTGATGTCTGGATTGGAGTCTCAGAACTGCGAGGTTTGGACGGAGGCTTGCTCTGAGTCGATCCTGAGTTTAGCGAAGCGGCCTGAGGTTGTTGATTGGTTGAAGAAGGTGAGGAGAAGAATCCATGAGAATCCGGAGCTTGCGTTCGAAGAATTCGAAACTAGTCAGTTAGTTCGCGATGAGTTGGATCGGATGGATATTAGCTACGAGCATCCGTTGGCTAAAACTGGCGTTCGTGCTTGGATCGGAACTGGCGGACCGCCTTTTGTTGCTCTTAGAGCCGATATGGATGCTCTTCCAATCCAGGAAGCTGTGGAATGGGAGCATAAAAGCAGAGTCCCAGGCAAGATGCATGCTTGTGGGCACGATGCTCACGTTACAATGCTTCTTGGTGCTGCCAAAATTTTAAAGGATCGTGAACATCTCTTGAAGGGGACGGTGATTCTACTATTTCAGCCAGCAGAGGAGGCCGGCAATGGCGCAAAGAGGATGATTGGAGATGGGGCTTTAAGAGACGTTCAAGCCATATTTGCAGTTCATGTTTCTCATGAACATCCCACCGCCGTTATCGGGTCCCGCCCCGGTCCTCTTCTTGCCGGCTGTGGCTTCTTTAGGGCCGTGATTACCGGCAAGAAGGGTCGTGCCGGTTCGCCACACCGGTCCGTCGACCCAGTTCTCGCTGCCTCCGCTGCGGTTGTCAGCTTGCAGGGGATTGTGTCTCGTGAAGCAAATCCTCTAGATTCGCAGGTAGTGTCAGTAACTTCGTTCAATGGAGGAAGTAATCTGGATATGATTCCAGACAGCGTCGTTATTGGAGGGACCTTCAGGGCTTTCTCCAACTCAAGTTTCTACCAAGTTCTTCAAAGAATAGAGGAGGTAATTGTGGAGCAGGCCAGTGTCTATAGATGCTCAGCAATGGTGGATTTCTTTGAAAAAGAATACACCATATACCCACCAACCGTAAATGATGAAAGAATGTATGAACATGTGAAGAAAGTGGCAATTGATCTTCATGGTTCACAAAATTTCAGGCTTGTCCAACCAATGATGGGAGCTGAGGACTTTTCCTTCTACTCAGAGTTTGTTCCTGCAGCCTTCTATTACATAGGAGTCAGGAATGAAACTTTAGGCTCGATCCACACGGGCCACTCCCCCTACTTTATGATCGACGAAGACGTCCTCCCGATCGGTGCTGCAACTCATGCAACCATAGCCGAGAGGTACCTGTACGAGCATGGAGAATGA 1416 49.22 MISSAKIFSIFFIAIHAFSLSSSSPVGGDHGGSPLIAGCGLQPLRISNSLKNKSIGALMSGLESQNCEVWTEACSESILSLAKRPEVVDWLKKVRRRIHENPELAFEEFETSQLVRDELDRMDISYEHPLAKTGVRAWIGTGGPPFVALRADMDALPIQEAVEWEHKSRVPGKMHACGHDAHVTMLLGAAKILKDREHLLKGTVILLFQPAEEAGNGAKRMIGDGALRDVQAIFAVHVSHEHPTAVIGSRPGPLLAGCGFFRAVITGKKGRAGSPHRSVDPVLAASAAVVSLQGIVSREANPLDSQVVSVTSFNGGSNLDMIPDSVVIGGTFRAFSNSSFYQVLQRIEEVIVEQASVYRCSAMVDFFEKEYTIYPPTVNDERMYEHVKKVAIDLHGSQNFRLVQPMMGAEDFSFYSEFVPAAFYYIGVRNETLGSIHTGHSPYFMIDEDVLPIGAATHATIAERYLYEHGE 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17868183 17875608 + ClCG08G005780.1 Cla08g00599 278254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00599 471 Pfam Peptidase family M20/M25/M40 148 463 IPR002933 GO:0016787
Cla08g00599 471 PANTHER PEPTIDASE M20 FAMILY MEMBER 46 469 IPR017439 GO:0016787
Cla08g00599 471 CDD M20_IAA_Hyd 91 466 IPR044757 GO:0009850|GO:0016787
Cla08g00599 471 Pfam Peptidase dimerisation domain 261 355 IPR011650 -
Cla08g00599 471 Gene3D Zn peptidases 93 451 - -
Cla08g00599 471 PIRSF Amidohydrol_AmhX 77 470 IPR017439 GO:0016787
Cla08g00599 471 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 46 469 - -
Cla08g00599 471 SUPERFAMILY Bacterial exopeptidase dimerisation domain 257 365 IPR036264 -
Cla08g00599 471 TIGRFAM amidohydrolases: amidohydrolase 93 454 IPR017439 GO:0016787
Cla08g00599 471 Gene3D - 256 374 - -
Cla08g00599 471 SUPERFAMILY Zn-dependent exopeptidases 86 468 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00599 K21604 IAR3, ILL6; jasmonoyl-L-amino acid hydrolase [EC:3.5.1.127] - csv:101215789 855.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01531 Cla-Chr3:30939024 Cla08g00599 Cla-Chr8:17868183 5.93E-159 dispersed
Cla05g02511 Cla-Chr5:36490094 Cla08g00599 Cla-Chr8:17868183 2.47E-175 dispersed
Cla08g00599 Cla-Chr8:17868183 Cla10g01773 Cla-Chr10:33652296 4.90E-109 dispersed
Cla08g00599 Cla-Chr8:17868183 Cla07g01288 Cla-Chr7:29987351 2.71E-176 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g253 . . . . . . . . Cmo04g02477 Cmo15g00685 . . . . Sed01g3120 . . Bhi04g01905 Tan11g1268 Cmetu03g0844 . Hepe02g2259 . Lcy10g1230 Cla08g00599 Cam08g1012 Cec08g0603 Cco08g0713 Clacu08g0724 . Cre08g0533 . . . Cone20ag0442 . . . Cme03g00543 Blo17g00176 . . Bda13g01480 . Bpe14g00384 . Bma02g00217 . . . . . Car04g02294 Car15g00620 Cpe01g02055 . . . . . . . . . . . . . . . Lsi08g00440 . Chy03g00792 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008544 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00599 Cla_Chr08 FPKM 0.0 0.0 0.638793 0.904044 0.0 0.0 0.0 0.0 0.0 0.0