Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00600 ATGGAATTGAAAACAGAAGTAAAGGAAGTTCAACACCATTTCCATGTACTGGCAGTGGATGATAGTCTTATTGATAGAAAGCTTTTGGAAAAGCTATTAACAATTTCTTCATGTGAAGTTACCTGTGTGGAATCTGGAGATAAAGCTCTTAGATATTTGGGTCTTCTTGATGATCTCGATAAATTCTCTTCTTCTGCTGCTGCTGCTTCTTTTTCTTCCTCACAACTCTCCCAACAACAGGAAGTCAAAGTCAACCTAATCATGACAGATTATTGTATGCCTGGGATGAGTGGTTATGATCTACTCAAACGACTCAAGGGATCTTATTGGAAGGATATTCCTGTTGTTGTGATGTCATCAGAGAACGAACCTTCAAGAATCAACATGTGTTTGGAAGAAGGAGCAGAGGAATTCCTTCTAAAACCTCTTCAACTATCAGATGTCAAGAAGCTCGAGCCTCACCTTCAAAAATCCCTCACCCGTTGTTCTACAGATCAAATCAATGAAGAAGAAATTACCACAGTCGGAATCGGAATCACCGACGAACAGAACTTGAAATTAGAAGAGAGTAAGAAGAATGAGAATAGCATTAATAATAGCTTGAGCAAGAGAAAGGCAGCGAATCCAGAGCATTGTGAAGAAAGACGACCAAAATTGAAAGAATTGGAAGCTGGAGAGGATACCTTGGATGAAACCATGTTCCATCTAAATGAGGATGCTCTAAAGAATGTAAATAATATAGAGGCTCTGAGTTTGAGTTTTCATCACTTTCACGAGGAAGTTGTGGTTTTCATGTATAGATTGATGTGCTACACCTATCAATATAACCATAAGAACCATAATCACTTGAATGACTATAATTACTATGAGAATAACCGTAACTACTATTGTTTTAGACATATTGACCATGTTCATATTTACTATCCAAACTCATCCCCTCCATACTTGAAACAATCAAGTCTGCATCAATTTGAGTATATCATATGTGGATTTTCTACAAATGATAGGTTTTCCTATTGCTTCAATTCATGGTCCACCAGCACTTTGATCATGGTCAAAGTCTTGTATGGCATGGGTAAACTGAGATTCTCCAATGAAGGAGCTAAGTCATTCATATTGTTGACCTTTTCCAACATTTTCCTGAACTTGACTGCCTCCATCACCACCATTATCTCCCTTGTACTACCATCATGA 1194 37.77 MELKTEVKEVQHHFHVLAVDDSLIDRKLLEKLLTISSCEVTCVESGDKALRYLGLLDDLDKFSSSAAAASFSSSQLSQQQEVKVNLIMTDYCMPGMSGYDLLKRLKGSYWKDIPVVVMSSENEPSRINMCLEEGAEEFLLKPLQLSDVKKLEPHLQKSLTRCSTDQINEEEITTVGIGITDEQNLKLEESKKNENSINNSLSKRKAANPEHCEERRPKLKELEAGEDTLDETMFHLNEDALKNVNNIEALSLSFHHFHEEVVVFMYRLMCYTYQYNHKNHNHLNDYNYYENNRNYYCFRHIDHVHIYYPNSSPPYLKQSSLHQFEYIICGFSTNDRFSYCFNSWSTSTLIMVKVLYGMGKLRFSNEGAKSFILLTFSNIFLNLTASITTIISLVLPS 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17908808 17914418 + ClCG08G005790.2 Cla08g00600 278255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00600 397 SMART REC_2 14 152 IPR001789 GO:0000160
Cla08g00600 397 PANTHER TWO-COMPONENT RESPONSE REGULATOR ORR4 8 222 - -
Cla08g00600 397 Pfam Response regulator receiver domain 66 149 IPR001789 GO:0000160
Cla08g00600 397 Gene3D - 15 269 - -
Cla08g00600 397 SUPERFAMILY CheY-like 14 150 IPR011006 -
Cla08g00600 397 MobiDBLite consensus disorder prediction 190 217 - -
Cla08g00600 397 CDD REC_typeA_ARR 16 151 - -
Cla08g00600 397 ProSiteProfiles Response regulatory domain profile. 15 156 IPR001789 GO:0000160
Cla08g00600 397 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 222 IPR045279 GO:0009736
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00600 Cla-Chr8:17908808 Cla10g01535 Cla-Chr10:30671838 5.82E-50 dispersed
Cla08g00600 Cla-Chr8:17908808 Cla06g01631 Cla-Chr6:29836743 7.34E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61533 PF00072 Response_reg 5.10E-15 CL0304 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00600 K14492 - csv:101216267 325.094