Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00602 AAAAAAAGTAAAAAAAAAAAAGAAAACTCGTTCAGGTTCAGCCGGTACCCCTTAAAACCCCTTCACGGACTGAAACTCTCTGAATATCGTTCACGGAGAGCTTCTTCCATTGCCTTAACAATGGCGTCTTCATCGTTGATTCGGTTCTGTGTGCTTGCTTCTGTTCTATTTTCTGCTTCTTTCTTTGAGATCTACGCGGAAGAGGCTGCGGCGAAGGAATTTGTTATTACTTTGGACAATTCCAACTTCTCCGATGTTGTTTCCAAGCATAACTTCATCGTCGTTGAGTTCTACGCCCCGTGGTGTGGGCATTGTAAGAACCTGGCACCAGAGTATGAAAAAGCTGCGTCTGTTTTGAGCAGTCATGACCCTCCGATTACTTTAGCCAAAGTTGATGCAAATGAAGAGTCGAACAGAGAGCTGGCAAGTCAATTTGAAATTAGGGGTTTCCCCACCATTAAGATACTCAGAAATGGGGGCAAATCAAGTCAGGATTACAAGGGACCTCGCGATGCAGATGGTATTGTTGACTACTTGAAGAAGCAAAGTGGGCCTGCTTCTGCTGAAATAAAATCTGCCGAGGATGCTAATAATCTCATTAAGAATGTTTTCATTGTTGGGATATTTCCAAAGCTTTCTGGAGAAGAGTTTGATAACTACATCGCTTTGGCTGAAAAGTTGCGTTCTGACTATGATTTTGGTCACACTTTGGATGCTAAGCTACTTCCACGTGGAGAAACATCCGTATCTGGCCCAATCGTTAGGCTTTTCAAGCCATTCGATGAACAATTTGTTGATTTTAAGGATTTCGATGCGGCTAAGTTGGAGAAGTTCATTGAAGAATCTAGTATTCCCGTGGTAACAGAGTTCAATAATGATCCTAGCAATCACGTATACCTTTCCAAGTTCTTCTCCACTTCTAATGATAAGGCTATGTTCTTTCTGAATTATGCCACAGAGGCCGCTGATTCTTTGAAATCCAAGTACCGTGAAGTTGCTGAACAGTACAAAGGAGAGGGAATAAGTTTCCTAATTGGAGACAGCCAATCCAGTCAAGCTGCTCTAAACTATTTTGGACTTAAGGAAGATCAAGTGCCTGTCCTTCTTGTGCAAAAAAATGATAGGTTTAAGTATGTGAAATTCAATGTGGAGGTTGATCAGATTGCTCCTTGGGTGAAGGAATACAAGATTGGCAATGTGCCACAATTCATAAAGTCAGAACCCATTCCTGAGAGTAACAATGAACCTGTGAAAGTGGTTGTTGCTGATAGCCTCCAGGATGTAGTCTTTAAATCTGGAAAAAATGTTTTACTGGAATTTTATTCTCCATGGTGCGGGCACTGCAAAAAACTTGCTCCAACTTTAGAGGAAGTGGCTGTCTCATATGAAAGCGATCCTGATGTCATCATCGCTAAGTTTGATGCCACGGCGAACGACATTGCAGATAGCGACTTTGATGTCCAAGGTTACCCTACTATGTATTTCAGGTCAGCAAGCGGAAAGCTGGTGGAGTACAGTGGTGATAGATCCAAGGAAGACATCATAAATTTCATTGAGACAAATCGCGATAAAATCGCAGAGGCAGATTCAAAACCCAAGGACGCAGAGGCAGATTCAAAACCCAAGGACTCAAACCCAGAATCAGAAGCCAAGGATGAGCTCTAA 1665 42.22 KKSKKKKENSFRFSRYPLKPLHGLKLSEYRSRRASSIALTMASSSLIRFCVLASVLFSASFFEIYAEEAAAKEFVITLDNSNFSDVVSKHNFIVVEFYAPWCGHCKNLAPEYEKAASVLSSHDPPITLAKVDANEESNRELASQFEIRGFPTIKILRNGGKSSQDYKGPRDADGIVDYLKKQSGPASAEIKSAEDANNLIKNVFIVGIFPKLSGEEFDNYIALAEKLRSDYDFGHTLDAKLLPRGETSVSGPIVRLFKPFDEQFVDFKDFDAAKLEKFIEESSIPVVTEFNNDPSNHVYLSKFFSTSNDKAMFFLNYATEAADSLKSKYREVAEQYKGEGISFLIGDSQSSQAALNYFGLKEDQVPVLLVQKNDRFKYVKFNVEVDQIAPWVKEYKIGNVPQFIKSEPIPESNNEPVKVVVADSLQDVVFKSGKNVLLEFYSPWCGHCKKLAPTLEEVAVSYESDPDVIIAKFDATANDIADSDFDVQGYPTMYFRSASGKLVEYSGDRSKEDIINFIETNRDKIAEADSKPKDAEADSKPKDSNPESEAKDEL 554
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17933797 17939127 - ClCG08G005800.1 Cla08g00602 278257

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00602 554 ProSiteProfiles Thioredoxin domain profile. 53 184 IPR013766 -
Cla08g00602 554 Gene3D Glutaredoxin 286 410 - -
Cla08g00602 554 SUPERFAMILY Thioredoxin-like 188 285 IPR036249 -
Cla08g00602 554 ProSitePatterns Thioredoxin family active site. 437 455 IPR017937 -
Cla08g00602 554 Gene3D Glutaredoxin 411 526 - -
Cla08g00602 554 PRINTS Thioredoxin family signature 101 110 - -
Cla08g00602 554 PRINTS Thioredoxin family signature 146 157 - -
Cla08g00602 554 PRINTS Thioredoxin family signature 93 101 - -
Cla08g00602 554 Pfam Thioredoxin-like domain 209 393 - -
Cla08g00602 554 Gene3D Glutaredoxin 66 183 - -
Cla08g00602 554 MobiDBLite consensus disorder prediction 525 554 - -
Cla08g00602 554 CDD PDI_b_family 187 281 - -
Cla08g00602 554 ProSitePatterns Thioredoxin family active site. 94 112 IPR017937 -
Cla08g00602 554 PANTHER PROTEIN DISULFIDE-ISOMERASE 47 544 - -
Cla08g00602 554 TIGRFAM pdi_dom: protein disulfide-isomerase domain 79 182 IPR005788 GO:0003756
Cla08g00602 554 TIGRFAM pdi_dom: protein disulfide-isomerase domain 421 520 IPR005788 GO:0003756
Cla08g00602 554 SUPERFAMILY Thioredoxin-like 282 414 IPR036249 -
Cla08g00602 554 Gene3D Glutaredoxin 184 285 - -
Cla08g00602 554 SUPERFAMILY Thioredoxin-like 75 185 IPR036249 -
Cla08g00602 554 Pfam Thioredoxin 75 181 IPR013766 -
Cla08g00602 554 Pfam Thioredoxin 417 519 IPR013766 -
Cla08g00602 554 CDD PDI_b'_family 308 396 - -
Cla08g00602 554 ProSiteProfiles Thioredoxin domain profile. 398 523 IPR013766 -
Cla08g00602 554 SUPERFAMILY Thioredoxin-like 383 523 IPR036249 -
Cla08g00602 554 PANTHER PROTEIN DISULFIDE ISOMERASE 47 544 - -
Cla08g00602 554 TIGRFAM ER_PDI_fam: protein disulfide isomerase 75 554 IPR005792 GO:0003756
Cla08g00602 554 CDD PDI_a_family 76 179 - -
Cla08g00602 554 CDD PDI_a_PDI_a'_C 416 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00602 K09580 PDIA1, P4HB; protein disulfide-isomerase A1 [EC:5.3.4.1] - csv:101216516 922.154
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla08g00602 Cla11g01541 CCT
Cla08g00602 Cla11g01541 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00602 Cla-Chr8:17933797 Cla02g02044 Cla-Chr2:35492147 4.49E-07 dispersed
Cla02g01777 Cla-Chr2:32806819 Cla08g00602 Cla-Chr8:17933797 2.23E-10 transposed
Cla03g00208 Cla-Chr3:2372110 Cla08g00602 Cla-Chr8:17933797 1.06E-67 transposed
Cla05g01521 Cla-Chr5:24979897 Cla08g00602 Cla-Chr8:17933797 1.23E-14 transposed
Cla05g02257 Cla-Chr5:34219370 Cla08g00602 Cla-Chr8:17933797 8.95E-09 transposed
Cla07g01249 Cla-Chr7:29513101 Cla08g00602 Cla-Chr8:17933797 4.46E-41 transposed
Cla09g00489 Cla-Chr9:4640104 Cla08g00602 Cla-Chr8:17933797 3.78E-15 transposed
Cla11g00771 Cla-Chr11:11089585 Cla08g00602 Cla-Chr8:17933797 4.37E-09 transposed
Cla11g01541 Cla-Chr11:29081073 Cla08g00602 Cla-Chr8:17933797 5.57E-154 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g250 Blo01g01298 . . . Bpe02g00639 . . Bma01g02074 Cmo04g02483 Cmo15g00679 . Cma09g00787 . . Sed01g3115 Cpe06g00621 . Bhi04g01901 Tan11g1265 Cmetu07g2195 . . . . Cla08g00602 Cam08g1016 Cec08g0606 Cco08g0717 Clacu08g0727 . Cre08g0535 Cone4ag1414 Cone7ag1524 Cone17ag1287 Cone20ag0440 Lsi04g02397 Csa04g01791 . Cme03g00538 Blo17g00175 Blo18g00181 . . Bpe02g01646 Bpe14g00385 Bma01g00810 Bma02g00216 . . Cmo09g00779 . . Car04g02297 Car15g00617 Cpe01g02058 . . . . . . . . Cla11g01541 Cam11g1603 Cec11g1631 Cco11g1633 Clacu11g1759 Cmu11g1576 Cre11g1994 Lsi08g00442 . Chy07g00630 Cme07g00838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003308 0 2 2 3 3 1 2 1 1 1 1 1 2 2 1 2 1 4 2 1 1 1 1 1 1 1 1 4 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00602 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0