Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00603 CCAAGAGGAGGGTTGGAATTGCAGAACCGTGTTGCCAAACAAGGTTTTTGCGTAGGCCAGGTTGATCCTAAACAAAAGGAGAGAGGCCGCAAAAAAGGAAAGCCCCAAATGGCCGAGCCTTTGTCCCTACAACTGACACTTCCATCGCATTCATCCCCCATTGCTGCTGCTTCGAAAAACTCAATTTCAACTAAATCCATGGCTGCTACCGTTTTTGGAACCGCCGCCGCCTCCTCCGCCTCATCAACCACTCGTTTCCTCTCCTCAGCCACCAGAGCTACACTATCTTTCTCTTCACGTTCACCATCGCTTCTCTCTCGCTCTTCGTCCTCCTCTTTCAAGTTCCTCAGATCGTCTCCTCTCATTTCTTACCTTTTTCTGAACCAGGGAAGGCCGAATTCTTGTGTATCGAATAGAGAATTCAGTGCGGCGTCTAATCCGAAATGCCTGGCATCGGACCCTGAGCAGTTGAAGAGTGCTAGAGAAGATATCAAGGAGCTCCTGAAGACCACATTCTGTCATCCTATTTTGGTACGTCTAGGTTGGCATGATGCTGGAACTTACAATAAAAATATTGAGGAATGGCCCCAGAGAGGTGGAGCTAATGGAAGTTTAAGATTTGATGTTGAGCTGGGGCATGGTGCCAATGCTGGTCTTGTTAATGCCTTGAAACTCATTGAGCCTATCAAAAAAAAGTATTCTAACGTGACATATGCAGACCTATTTCAGCTGGCCAGTGCTACAGCTATCGAGGAGGCTGGCGGACCCAAAATCCCCATGAAGTATGGAAGGGTGGATGTTGTTGGGCCGGAGCAATGCCCTGAGGAGGGGAGGCTTCCTGATGCTGGTCCTCCATCACCTGCTGCACATCTACGAGAAGTTTTCTACAGAATGGGGTTGAATGACAAGGAAATAGTTGCATTATCTGGGGCACACACGCTAGGGAGAGCTAGGCCAGAACGCAGTGGTTGGGGCAAGCCAGAGACCAAATATACGAAAGATGGACCTGGTGCACCTGGTGGTCAATCCTGGACCGTGCAATGGTTGAAGTTTGACAACTCATATTTTAAGGATATCAAAGAGAGGGCAGATGAGGAATTACTGGTGTTGCCAACTGACGCAGTTCTCTTTGAAGATCCAGGATTTAAGGTAAAGCTGATCCACACGTTCCCCACCCCATCGTTGCTCCCTTCAGGAGGCATTATCTTGGTTTATGCTGAAAAATATGTTGAAGATCAAGAAGCATTCTTCAAAGATTATGCTGAAGCCCATGCCAAACTCAGCAACCTTGGTGCTAAATTTGACCCTCCTGAGAGAGAGCTATCAGACTCAATGAAGCAGAAGATTCGGGCTGAATACGAAGGTTTTGGTGGAAGTCCAGATAAGCCTTTACCAACAAACTACTTCCTTAATATCATTGTTGTGATTGCTGTTTTAGCAATTTTGACATCCCTGCTTGGAAACTAA 1467 47.03 PRGGLELQNRVAKQGFCVGQVDPKQKERGRKKGKPQMAEPLSLQLTLPSHSSPIAAASKNSISTKSMAATVFGTAAASSASSTTRFLSSATRATLSFSSRSPSLLSRSSSSSFKFLRSSPLISYLFLNQGRPNSCVSNREFSAASNPKCLASDPEQLKSAREDIKELLKTTFCHPILVRLGWHDAGTYNKNIEEWPQRGGANGSLRFDVELGHGANAGLVNALKLIEPIKKKYSNVTYADLFQLASATAIEEAGGPKIPMKYGRVDVVGPEQCPEEGRLPDAGPPSPAAHLREVFYRMGLNDKEIVALSGAHTLGRARPERSGWGKPETKYTKDGPGAPGGQSWTVQWLKFDNSYFKDIKERADEELLVLPTDAVLFEDPGFKVKLIHTFPTPSLLPSGGIILVYAEKYVEDQEAFFKDYAEAHAKLSNLGAKFDPPERELSDSMKQKIRAEYEGFGGSPDKPLPTNYFLNIIVVIAVLAILTSLLGN 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17949623 17956002 - ClCG08G005810.1 Cla08g00603 278258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00603 488 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 446 488 - -
Cla08g00603 488 PANTHER L-ASCORBATE PEROXIDASE 8, CHLOROPLASTIC-RELATED 74 443 - -
Cla08g00603 488 Pfam Peroxidase 161 382 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 Gene3D - 160 281 - -
Cla08g00603 488 Gene3D Peroxidase, domain 2 282 384 - -
Cla08g00603 488 MobiDBLite consensus disorder prediction 317 339 - -
Cla08g00603 488 Gene3D Peroxidase, domain 2 396 423 - -
Cla08g00603 488 PRINTS Haem peroxidase superfamily signature 344 359 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Haem peroxidase superfamily signature 174 188 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Haem peroxidase superfamily signature 304 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Haem peroxidase superfamily signature 254 266 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Haem peroxidase superfamily signature 236 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 74 443 IPR044831 GO:0004601|GO:0034599
Cla08g00603 488 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 446 488 IPR044831 GO:0004601|GO:0034599
Cla08g00603 488 SUPERFAMILY Heme-dependent peroxidases 155 433 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 CDD ascorbate_peroxidase 151 435 - -
Cla08g00603 488 MobiDBLite consensus disorder prediction 17 38 - -
Cla08g00603 488 ProSiteProfiles Plant heme peroxidase family profile. 177 457 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 ProSitePatterns Peroxidases proximal heme-ligand signature. 304 314 IPR019793 -
Cla08g00603 488 PRINTS Plant ascorbate peroxidase signature 235 253 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Plant ascorbate peroxidase signature 254 266 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla08g00603 488 PRINTS Plant ascorbate peroxidase signature 174 189 IPR002207 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00603 K00434 E1.11.1.11; L-ascorbate peroxidase [EC:1.11.1.11] - csv:101216755 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00603 Cla-Chr8:17949623 Cla03g00195 Cla-Chr3:2172289 2.73E-59 dispersed
Cla08g00603 Cla-Chr8:17949623 Cla02g00433 Cla-Chr2:4231990 2.21E-68 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g248 . . . . . . . . Cmo04g02484 Cmo15g00678 . . . . Sed01g3111 . . Bhi04g01899 Tan11g1263 Cmetu03g1741 . Hepe02g2244 . . Cla08g00603 Cam08g1017 Cec08g0607 Cco08g0718 Clacu08g0728 . Cre08g0536 . Cone7ag1522 Cone17ag1289 Cone20ag0439 . . . Cme03g00534 Blo17g00174 . . Bda13g01479 Bpe02g01647 Bpe14g00386 Bma01g00808 Bma02g00215 . . . . . Car04g02298 Car15g00616 Cpe01g02059 . . . . . . . . . . . . . . . Lsi08g00443 . Chy03g00786 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003748 3 2 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00603 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0