Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla08g00608 | ATGTCGGAAGTAATTGCCGTAATGGATATTGACGACGATAATGGCAACAACGAAGCTGAAAAGACAGACAAGGGCAAAAATGTTGCCAGTCCTGCTGCCGCACCCGACGGCAAAGCGATACCCTGGGTCGAGAAGTTTCGGCCTAAGTCTCTTGCTGATGTTGCTGCTCACCGCGACATTGTTGACACCATCGACAAGCTGACCAGTGAGCATAGGCTGCCACATCTCCTGTTGTACGGCCCTCCTGGCACAGGCAAGACATCAACTATTCTAGCGGTTGCTCGCAAGCTTTATGGAACAAACTACCATAATATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTCAGACAGCAGATTCAGGATTTTGCAAGTACCCAGAGCTTCTCATTTGGGGCAAAGGCATCTGTAAAATTGGTTTTATTGGACGAGGCAGATGCCATGACTAAAGATGCACAGTTTGCTTTACGTAGAGTAATTGAGAAATACACAAAAAATACGAGGTTTGCTCTTATTTGCAATCACGTCAATAAGATTATTCCAGCATTACAATCAAGGTGTACCCGCTTTCGATTTGCTCCCCTCGATAACTTTCATGTCACTGAGCGGCTCAGATATGTTATTGAGGCTGAGAGGTTGGATGTCACTGAGAGTGGCTTAACTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGAATAAAGTGATGACTTCATTTATAAGAATTAGGAAATATGGGGGTATAAATGGGAAACACATCATGTTGGATGTCACTGAGAGTGGCTTAACTGCCCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACGCATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTTTGCACAGGAAATCCAATGCCTAAAGACATAGAGCAAATATCATTTTGGCTGCTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATAAAGACCAGAAAAGGATTGGCTTTGGTTGATATAGTGAGAGAAGTCACTCTGTTCGTTTTTAAGATAAAGATGCCATCAGATATCAGAGTCCAGTTGATTAATGATCTAGCTGACATAGAGTACCGGATGAGTTTCGGATGCAATGACAAGTTACAACTCGGATCGCTCATCTCATCTTTTACACGAGCTAGATCTGCACTCGTCGCTGCTGCACAGTAG | 1239 | 43.02 | MSEVIAVMDIDDDNGNNEAEKTDKGKNVASPAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSEHRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVIEAERLDVTESGLTALVRLCSGDMRKALNILQNKVMTSFIRIRKYGGINGKHIMLDVTESGLTALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEIKTRKGLALVDIVREVTLFVFKIKMPSDIRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVAAAQ | 412 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 17999191 | 18008718 | + | ClCG08G005860.1 | Cla08g00608 | 278263 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla08g00608 | 412 | Gene3D | - | 313 | 410 | - | - | |
| Cla08g00608 | 412 | Gene3D | - | 202 | 263 | - | - | |
| Cla08g00608 | 412 | Gene3D | - | 264 | 312 | - | - | |
| Cla08g00608 | 412 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 313 | 403 | IPR008921 | GO:0003677|GO:0006260 | |
| Cla08g00608 | 412 | Gene3D | - | 36 | 198 | IPR027417 | - | |
| Cla08g00608 | 412 | CDD | HLD_clamp_RFC | 266 | 310 | - | - | |
| Cla08g00608 | 412 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 37 | 248 | - | - | |
| Cla08g00608 | 412 | PANTHER | REPLICATION FACTOR C SUBUNIT 5 | 266 | 408 | - | - | |
| Cla08g00608 | 412 | CDD | HLD_clamp_RFC | 203 | 243 | - | - | |
| Cla08g00608 | 412 | CDD | AAA | 60 | 198 | - | - | |
| Cla08g00608 | 412 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 40 | 247 | IPR027417 | - | |
| Cla08g00608 | 412 | SMART | AAA_5 | 72 | 202 | IPR003593 | - | |
| Cla08g00608 | 412 | Pfam | ATPase family associated with various cellular activities (AAA) | 76 | 196 | IPR003959 | GO:0005524|GO:0016887 | |
| Cla08g00608 | 412 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 37 | 248 | - | - | |
| Cla08g00608 | 412 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 266 | 408 | - | - | |
| Cla08g00608 | 412 | Pfam | Replication factor C C-terminal domain | 313 | 399 | IPR013748 | - | |
| Cla08g00608 | 412 | MobiDBLite | consensus disorder prediction | 9 | 34 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla05g00362 | Cla-Chr5:3284044 | Cla08g00608 | Cla-Chr8:17999191 | 3.76E-08 | dispersed | |
| Cla07g01045 | Cla-Chr7:26935707 | Cla08g00608 | Cla-Chr8:17999191 | 8.37E-12 | dispersed | |
| Cla08g00608 | Cla-Chr8:17999191 | Cla11g01553 | Cla-Chr11:29267069 | 1.46E-59 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla08g00608 | K10756 | - | csv:101217230 | 665.611 |