Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00611 ATGTCAGCAAAGATAGGCCGTCGTGGAATCGCCAAGAGGCAAGAGCAAGAGGATAAGCAGCAGCAGCTTCCCCAAAGGATTTCTCTCGCTTATGTTGAACAGGTAAACTCAGATTTGATCATGGCCTTAGCAATGCAGCAGCAGGAGCACGAGCTGGCCTATACGATGCTCGAGACCATTGAAAGTGATAGTGACGAAGATGAATATTCAGATTCTAACAGCAACAATGTTCTCGATCCCAATGCCTCCTCGCAAAGGCAAGAGCTTCTCTCGCGGTGGGCTTTTTTGGAAGATGATGAGGAGACTACCGATGGAAATGAAGATATGGAAGAAGATGAAGATGGGGATCTTGAGGATTTTGATTTGGACGAGCTAACTTATGAAGAGTTGATTGCATTAGGGGAGTTAATTGGAGAAGAAAAGAGGGGCCTACCAGTGAACGAAATACCTTCATGCTTGCACTCGAGCAAGTTCCGAACTATCGAAAACAGAAGTGGTATAGATCGGTGTGTGATTTGCCAAGTTGAATATGAAGATGGTGAAGAATTGGCTGCTCTTTCTTGTGAGCATCCTTACCATTCAGAATGTATAGGCAAATGGCTTCAAATCAAAAGGGTTTGTCCAATATGTGGCACAGAAGTTTCATCCCCTAAGGGTTCTAAAAATGCATAA 672 44.05 MSAKIGRRGIAKRQEQEDKQQQLPQRISLAYVEQVNSDLIMALAMQQQEHELAYTMLETIESDSDEDEYSDSNSNNVLDPNASSQRQELLSRWAFLEDDEETTDGNEDMEEDEDGDLEDFDLDELTYEELIALGELIGEEKRGLPVNEIPSCLHSSKFRTIENRSGIDRCVICQVEYEDGEELAALSCEHPYHSECIGKWLQIKRVCPICGTEVSSPKGSKNA 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18045210 18046224 - ClCG08G005885.1 Cla08g00611 278266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00611 223 MobiDBLite consensus disorder prediction 1 24 - -
Cla08g00611 223 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 219 IPR033276 GO:0004842|GO:0016567|GO:0046621
Cla08g00611 223 SUPERFAMILY RING/U-box 169 217 - -
Cla08g00611 223 SMART ring_2 170 210 IPR001841 -
Cla08g00611 223 MobiDBLite consensus disorder prediction 62 84 - -
Cla08g00611 223 Pfam Ring finger domain 169 210 IPR001841 -
Cla08g00611 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 219 IPR013083 -
Cla08g00611 223 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 16 219 - -
Cla08g00611 223 ProSiteProfiles Zinc finger RING-type profile. 170 210 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00611 K19045 BB; E3 ubiquitin-protein ligase BIG BROTHER and related proteins [EC:2.3.2.27] - csv:101217935 314.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01392 Cla-Chr2:28325205 Cla08g00611 Cla-Chr8:18045210 2.75E-32 dispersed
Cla08g00611 Cla-Chr8:18045210 Cla09g00385 Cla-Chr9:3749300 1.28E-16 dispersed
Cla08g00611 Cla-Chr8:18045210 Cla02g02258 Cla-Chr2:37686935 1.73E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g241 . . . . . . . . Cmo04g02489 . . . . . Sed01g3107 . . Bhi04g01887 Tan11g1255 Cmetu03g0877 . Hepe02g2233 . Lcy10g1240 Cla08g00611 Cam08g1025 Cec08g0614 Cco08g0726 Clacu08g0735 . Cre08g0543 . . . . . . . . . Blo18g00179 . Bda01g01452 Bpe02g01648 . . . . . . . . Car04g02303 . . . . . . . . . . . . . . . . . Lsi08g00451 . Chy03g00769 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007823 3 3 1 0 1 1 2 1 1 1 1 1 3 1 1 2 1 1 0 1 1 1 1 1 0 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00611 Cla_Chr08 FPKM 18.04315 19.306643 12.182637 14.107041 17.837835 18.819136 16.849699 20.363695 20.16931 19.573944