Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00615 ATGGGAAGTCTGCAGAAGGAAGCACAAATGAGTACGGTGGCGACACCGTCCTTTGGTGGTGGCAACAACCGGATAGCGGCAGTTAACACGGTGGAGAGAACAACTCCGGCCAACGCCGTCAAGCCACAGACCACCACCCATCAGAAACCTGGATGGAGAAAGTTTCTATCACACGTTGGCCCTGGCTTCCTCGTCTCATTGGCTTATCTTGATCCTGGCAATTTGGAAACGGACTTGCAAGCTGGAGCTAATCACGGATTCGAGCTTCTATGGGTGGTGCTTATCGGATTAATATTTGCGCTCATAATCCAATCCCTTGCTGCAAATCTTGGCGTAAGCACCGGAAAACACCTTTCGGAAGTATGCAAAGCCGAATATCCCATATTTGTGAAGTATTGCCTTTGGTTGCTGGCTGAAGTTGCTGTAATAGCCGCCGATATTCCCGAAGTGATAGGAACAGCCTTTGCTTTGAATATTCTATTCCATATTCCTGTTTGGGCTGGAGTTCTTCTCACCGGCTTAAGTACCCTATTGCTCCTTGGACTCCAAAGATATGGGGCTCGGAAGCTGGAATTGCTGATAGCAATATTGGTGTTCATAATGGCGGCGTGTTTCTTCGGGGAAATGAGCTACGTGAAGCCGCCGGCGAGCGGAGTTTTAAAAGGAATGTTTGTTCCAAAGCTGAAGGGGGAAGGAGCCACCGGCGACGCCATTGCTCTTCTGGGGGCCCTCGTTATGCCGCATAACCTGTTTCTTCATTCTGCTCTGGTGCTATCAAGGAAAGTCCCCAATTCCGTCCGCGGTGTCAACGACGCGTGTAGGTACTTCCTAATAGAGAGCGGATTTGCATTGTTCATAGCATTTTTAATAAACGTGGCCGTGGTTTCAGTTTCCGGCACCGTTTGTACGGTGGGAAAAGTCTCCGAAACCACTGCTAATCAGTGCTCCGACATAACTCTCAACTCCGCCTCCTTCCTCCTCCAGAACGTTTTGGGAAAATCAAGCTCCATTATTTACGCCATTGCGTTGTTTGCCTCCGGACAAAGCTCCAGCATCACCGGCACTTATGCCGGTCAGTTCATCATGCAGGGATTTTTGGACCTGAAAATGAAAACATGGGCGAGAAACCTTATGACAAGGTCCATTGCAATAACCCCTAGTCTCATTGTATCCATCATCGGTGGACCTCAAGGAGCTGGCCGTCTCATCATTATTGCATCGATGATTCTCTCCTTCGAGCTTCCATTTGCTCTAATTCCACTCCTCAAATTCAGTAGCAGCACCACCAAGATGGGCCCCCACAAGAATTCCATATACATCATTGTAATCTCGTGGATATTGGGCCTGGGAATCATCGGTATCAACATCTATTATCTCAGTACGGGCTTCGTGGGCTGGCTAATCCACAACAATTTACACAAAGTTGCAAATGTTTTCATTGGGATCGTTGTGTTTCCGTTAATGGCCACGTATATTCTTGCCGTTATTTACTTAACGTTTCGCAAAGACAGGGTCGTGACTTACATTGAGCCCGAAAAGGATGATCCTATGGGCCAAGCTCATTTGGAAAGTGGGCTGAACAATGCTTTTGGGCCGCGTGACGTCACCCCTGTGCCTTTTAGAGAGGATTTGGCCCATATCCCACTACCAGAGTAG 1656 48.31 MGSLQKEAQMSTVATPSFGGGNNRIAAVNTVERTTPANAVKPQTTTHQKPGWRKFLSHVGPGFLVSLAYLDPGNLETDLQAGANHGFELLWVVLIGLIFALIIQSLAANLGVSTGKHLSEVCKAEYPIFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGLSTLLLLGLQRYGARKLELLIAILVFIMAACFFGEMSYVKPPASGVLKGMFVPKLKGEGATGDAIALLGALVMPHNLFLHSALVLSRKVPNSVRGVNDACRYFLIESGFALFIAFLINVAVVSVSGTVCTVGKVSETTANQCSDITLNSASFLLQNVLGKSSSIIYAIALFASGQSSSITGTYAGQFIMQGFLDLKMKTWARNLMTRSIAITPSLIVSIIGGPQGAGRLIIIASMILSFELPFALIPLLKFSSSTTKMGPHKNSIYIIVISWILGLGIIGINIYYLSTGFVGWLIHNNLHKVANVFIGIVVFPLMATYILAVIYLTFRKDRVVTYIEPEKDDPMGQAHLESGLNNAFGPRDVTPVPFREDLAHIPLPE 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18076250 18084180 - ClCG08G005920.2 Cla08g00615 278270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 Pfam Natural resistance-associated macrophage protein 76 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 Hamap Divalent metal cation transporter MntH [mntH]. 42 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 PANTHER METAL TRANSPORTER NRAMP5 45 551 - -
Cla08g00615 551 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 45 551 IPR001046 GO:0016020|GO:0030001|GO:0046873
Cla08g00615 551 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00806 Cla-Chr2:10614508 Cla08g00615 Cla-Chr8:18076250 2.35E-104 dispersed
Cla04g00894 Cla-Chr4:23946270 Cla08g00615 Cla-Chr8:18076250 8.04E-31 dispersed
Cla08g00615 Cla-Chr8:18076250 Cla10g01233 Cla-Chr10:27084385 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00615 K21398 - csv:101219356 939.102