Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00616 ATGTCTGCCCATAATCGCCGCCCTTCGTTTTCGTCGTCGACATCCTCCTCGTTGGCCAAACGACAAGCGTCCTCGGCCTCGTCGTCAGACAATGTCGGAAAAGTTATGGCAGTTCCGCCACATTTGGCGAAGAAGCGAGCACCACTCGGTAACCTAACGAATTTTAAGAATGTGTCTCATAGCGCAGCCAAAAGCTCTGTTCCTCCTGCTATTATGATCTTGTCAATGGAACCCAGTTCCATTGTTGAATATCTGTACCCTTTGCTGATTTTACCTATAATCAACCATGATTCTGAAGCCTTACCAAATGGAATTACAAATTTGCAGGTGCCTTGTGCAACCAAAGCTGTCAAGGCTAGAAAGAGTTCCCCTGCTAGAACTCGCAGCACTAACTTGACGACGACTAATACAACCACATTGCTCGATGTCAAAACTACGAATGCAATTGCTCCTAGCAATGTTACAGCTTTCTCAAGAACTGATGCAACCGCTGTCTCTAGTTCTATGGATGTCTCTCCCTCTAAATCAGATGGAGTTTCAGTTTCCTTAGATGAAACTATGTCTACTTGCGATTCGTTTAAGAGTCCGGACGTCGAGTACTTGGACAATACTGATGTCCCAGCAGTTGATTCTGTTGAGAGGAAAACTAAAAGCAGTCTCTGCATTTCAGGTCCTGCACCAATTAGTAGTCAGGCACCAGTTAAAGGTAGTATATGCAATAGAGATGTAATTACAGAAATGGAAACAGATGGCGACATCGTTGATGTTGACACGGATTTCATGGATCCGCAGCAATGTGCTACAATTGCTTGTGACATTTACAAGCACTTACGAGCATCTGAGGCAAAGAAAAGGCCTTCAACAGATTTCATGGAGAAAATTCAGAAGGATATAAATTCAAATATGCGTGCCATACTGATCGATTGGCTTGTGGAGGTAGCAGAAGAGTATAGGCTTGTCCCAGATACTCTATATTTGACAGTAAACTACATTGATCGATACCTATCTGGAAATTCGATGGATCGACAACGATTACAATTGCTTGGTGTTGCTTGCATGATGATTGCCTCAAAATATGAAGAGATCTGTGCGCCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGACGAGGTATTGGAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTCGAAATGACGGCCCCTACACCTAAATGTTTCTTAAGGCGATTTGTTCGTGCTGCTCAAGGCGCCACCGATGAGGTTTCATCAATGCAGTTGGAATGCTTGGCCAACTTCCTTGCTGAATTATCTCTTATAGAATACAGTATGCTCTGCTACGCACCATCGCTCGTAGCTGCCTCGGCGATCTTCTTGGCGAAGTTCATACTTCTTCCAACTAAGAGACCATGGAACTCCACCTTGCAACATTATACTCATTATCAGCCATCCGACCTTGTCGACTGCGTTAAGGATTTGCATCGCCTCTGCTGCAACACCCACAATTCTAGCTTACCAGCCATCAGAGAGAAATACAGCCAGCATAAGGTTAGCAACTTAGCAGCAGACTCTTTACAAGCACGTGGCCAAGAAGTACTGCCCTCCGACGATACCGCCGGAGTTCTTCCAGAATCAAACACAGTAAATTTGTATTCCAATGCTCTGTTGGATTAG 1671 43.75 MSAHNRRPSFSSSTSSSLAKRQASSASSSDNVGKVMAVPPHLAKKRAPLGNLTNFKNVSHSAAKSSVPPAIMILSMEPSSIVEYLYPLLILPIINHDSEALPNGITNLQVPCATKAVKARKSSPARTRSTNLTTTNTTTLLDVKTTNAIAPSNVTAFSRTDATAVSSSMDVSPSKSDGVSVSLDETMSTCDSFKSPDVEYLDNTDVPAVDSVERKTKSSLCISGPAPISSQAPVKGSICNRDVITEMETDGDIVDVDTDFMDPQQCATIACDIYKHLRASEAKKRPSTDFMEKIQKDINSNMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKDEVLEMESSVLNYLKFEMTAPTPKCFLRRFVRAAQGATDEVSSMQLECLANFLAELSLIEYSMLCYAPSLVAASAIFLAKFILLPTKRPWNSTLQHYTHYQPSDLVDCVKDLHRLCCNTHNSSLPAIREKYSQHKVSNLAADSLQARGQEVLPSDDTAGVLPESNTVNLYSNALLD 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18110480 18116350 + ClCG08G005930.1 Cla08g00616 278271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00616 556 Gene3D - 286 399 - -
Cla08g00616 556 SUPERFAMILY Cyclin-like 262 398 IPR036915 -
Cla08g00616 556 Pfam Cyclin, C-terminal domain 401 520 IPR004367 -
Cla08g00616 556 Pfam Cyclin, N-terminal domain 272 398 IPR006671 -
Cla08g00616 556 CDD CYCLIN 399 493 IPR013763 -
Cla08g00616 556 CDD CYCLIN 302 391 IPR013763 -
Cla08g00616 556 PANTHER CYCLINS 34 522 IPR039361 -
Cla08g00616 556 SMART Cyclin_C_2 401 522 IPR004367 -
Cla08g00616 556 MobiDBLite consensus disorder prediction 1 32 - -
Cla08g00616 556 SMART cyclin_7 405 494 IPR013763 -
Cla08g00616 556 SMART cyclin_7 308 392 IPR013763 -
Cla08g00616 556 SUPERFAMILY Cyclin-like 401 520 IPR036915 -
Cla08g00616 556 ProSitePatterns Cyclins signature. 303 334 IPR006671 -
Cla08g00616 556 MobiDBLite consensus disorder prediction 1 34 - -
Cla08g00616 556 Gene3D - 272 520 - -
Cla08g00616 556 PANTHER CYCLIN-A1-1 34 522 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00659 Cla-Chr2:7554924 Cla08g00616 Cla-Chr8:18110480 5.61E-67 dispersed
Cla05g02086 Cla-Chr5:32502845 Cla08g00616 Cla-Chr8:18110480 1.47E-95 dispersed
Cla07g00521 Cla-Chr7:7735317 Cla08g00616 Cla-Chr8:18110480 2.40E-17 dispersed
Cla08g00616 Cla-Chr8:18110480 Cla08g01290 Cla-Chr8:25779251 1.74E-89 dispersed
Cla08g00616 Cla-Chr8:18110480 Cla09g00216 Cla-Chr9:2169330 4.28E-104 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00616 K06627 - csv:101221569 837.025