Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00617 ATGATCATAGAGCATCACATCTTAATCTTCTCGATTTTTAGCCATCTTTCTACTCTCCCTGTGTCGACCGTCTTCACTATCGGTATGCCTCTGCTTCTCCTTTGTTGCCTTCTCCAGTTTTCTTCTCTCCTTCCGCCATCGTCTGCGGCGGTTACAGGCGGAGATGTTCTCAATGGCAACAGCATAGTCTTCACCACCCTCGGCAGGTCCTTCTACGCCTTTGATATCTTCACCCTCCCGGCTGATGGCAACAGTTACCCTTCCGCAGCGGATAAAACCCAAATCACTGACGGCCAATCCGTCAATTTCAATGGCTATTTCCCTTCCCCCTCGTCATCTCCTTCGCTTATATCTCTTTTAACAAACCAATCACAGTCCTTAAAGCCGGATTTGGAACTCGTCTATGTTACGGAGAGAGACGGAATCTCCAGAATCTTCTACGATGCCATTTTCGGGGGTACCGGATTAAGCGCCAGACGGCGGTCGGAGCTCGAGATTCCTCATCGACTGCAAATTTCACTTTTGGATGATGAGAAGGAAGACGGAGTTAGGGTTTCCTTCAAAGATCGGCCGAGTTTAAGTGGCGATTATTTGGTGTACGTGTCGACTCACGAGGATCCTGGTGAGTCTAGAACGAGTTGGGCGGCAGTGTACTCAAGGAGTTTGAAATCCGGTATAACTCGGCGATTGACGCCTTACGGAATCGCCGATTTTAGCCCCTCTGTTTCGCCGTCTGGAATTTGGACGGCTGTGGCTTCTTACGGTGAGAAGGGTTGGGCCGGCGAGGTTGAGGAACTAAGTACTGATTTATACATCTTCCTAACTCGCGACGGAACACGTCGAGTTAAGGTCGTCGAACACGGTGGCTGGCCGTGTTGGGCTGACGATTCAACTCTGTATTTTCACCGGAGAGGTGATGATCAGTGGCTGAGTATATACAGAGCGATTCTACCGAGTCATGGAGAAGTTTCTCCCGATTCAGTGAAAATCGAACGACTCACACCACCTGGTTTGCACGTATTCACTCCGGCCACTTCACCGGCCAACAAAAACCTCATCGCCGTTGCAACGAGAAGACCCGATTCATCTTTTCGCCACATAGAGCTGTTCAACCTCGTAACCAGAGAGTTCAAGGAGTTGACGAAAACGGTTTCGCCTAAATCTCATCATTTCAATCCGTTCATCTCCGCCGACGGGACAAGTATCGGTTACCACAAGTGCAGAGGCGACGACAATGGAAGAAAAAACAACCCCCTATTCTTAGAGAACGTTCGTAGCCCTGTCTCTAACTTATCCTTATTCAGAATCGCCGGTTCTTTTCCCTCTTTTTCGCCTGCCGGTGACCGTATAGCGTACGCGAACTTCCCGGGATTATACGTCATCAATCGGGACGGTTCGAACCGACGGGTGGTTTTCTCTGGCGCAGCGTTCTCCACCGCGTGGGACCCAGTGCGGGAAGGTGTAGTATACACCAGCGCCGGTCCCGATTTTGCGGCGGTGAGTTCTGAAGTCGATATCATTGCAGTCAACGTCGATGACGACGAGAGAAATTTCAAGAAGCTGACGACGAACGGTGTAAACAATGCCTTCCCATCGCCGTCCCCCGACGGGAAATGGATCGTTTTCCGGTCGGGTCGAACCGGGTACAAGAACTTGTACATAATGGACGCCGTCGACGGTGAGAGAAAAGGGCTTCGCCGGCTTACAGAAGGCAAGTGGACGGATACGATGTGCAGTTGGTCGCCGGACGGTGATTGGATTGCATTTTCATCGGACCGGGATAATCCCGGAGCCGGAAGTTTCGATCTGTTCTTGATCCACCCGAACGGAACCGGGTTGAGGAAGCTGTTTCAAAGCGGCTCGGCAGGTCGGGCGAACCACCCGAATTGGAGTCCCGACGGGAAGGTTCTAGTGTTCACTACAGACAATGCGGGAATATCTGCGGAGCCAATATCGAACCCACATCACTATCAACCCTACGGCGAGATCTACACTATCAAATTGGACGGCTCTGATCTTCAGAGGCTGACTCACAACTCCTACGAGGATGGGACGCCCACGTGGAGCCCACGTTACATCAGTCCCGTCGACGTGGAGAGTATATATGACGTGGAACCCTGTGGCTTTGAAGATTGTCACTGGCTTAACCAAAAGAAGGTCCATAATGATATTAGGCCCATTTTAACTGGGCCTCGATGCAGCCCATAA 2208 51.18 MIIEHHILIFSIFSHLSTLPVSTVFTIGMPLLLLCCLLQFSSLLPPSSAAVTGGDVLNGNSIVFTTLGRSFYAFDIFTLPADGNSYPSAADKTQITDGQSVNFNGYFPSPSSSPSLISLLTNQSQSLKPDLELVYVTERDGISRIFYDAIFGGTGLSARRRSELEIPHRLQISLLDDEKEDGVRVSFKDRPSLSGDYLVYVSTHEDPGESRTSWAAVYSRSLKSGITRRLTPYGIADFSPSVSPSGIWTAVASYGEKGWAGEVEELSTDLYIFLTRDGTRRVKVVEHGGWPCWADDSTLYFHRRGDDQWLSIYRAILPSHGEVSPDSVKIERLTPPGLHVFTPATSPANKNLIAVATRRPDSSFRHIELFNLVTREFKELTKTVSPKSHHFNPFISADGTSIGYHKCRGDDNGRKNNPLFLENVRSPVSNLSLFRIAGSFPSFSPAGDRIAYANFPGLYVINRDGSNRRVVFSGAAFSTAWDPVREGVVYTSAGPDFAAVSSEVDIIAVNVDDDERNFKKLTTNGVNNAFPSPSPDGKWIVFRSGRTGYKNLYIMDAVDGERKGLRRLTEGKWTDTMCSWSPDGDWIAFSSDRDNPGAGSFDLFLIHPNGTGLRKLFQSGSAGRANHPNWSPDGKVLVFTTDNAGISAEPISNPHHYQPYGEIYTIKLDGSDLQRLTHNSYEDGTPTWSPRYISPVDVESIYDVEPCGFEDCHWLNQKKVHNDIRPILTGPRCSP 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18114177 18116384 - ClCG08G005940.2 Cla08g00617 278272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00617 735 Pfam WD40-like Beta Propeller Repeat 566 604 IPR011659 -
Cla08g00617 735 Pfam WD40-like Beta Propeller Repeat 626 642 IPR011659 -
Cla08g00617 735 Pfam WD40-like Beta Propeller Repeat 521 554 IPR011659 -
Cla08g00617 735 SUPERFAMILY DPP6 N-terminal domain-like 192 496 - -
Cla08g00617 735 Gene3D - 422 598 IPR011042 -
Cla08g00617 735 Gene3D - 160 421 IPR011042 -
Cla08g00617 735 SUPERFAMILY Tricorn protease N-terminal domain 439 690 - -
Cla08g00617 735 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 60 711 - -
Cla08g00617 735 Gene3D - 622 693 IPR011042 -
Cla08g00617 735 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 60 711 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00617 - - - bhj:120075362 1296.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00617 Cla-Chr8:18114177 Cla09g00435 Cla-Chr9:4151662 2.60E-167 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00617 Cla_Chr08 FPKM 24.345465 26.629227 272.721191 281.070374 50.263653 51.58976 46.072842 64.152756 68.044502 61.604694