Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00621 ATGATGAGAATTTGTAGCCATCGAAGAAATAAACTTACAGTGTGTAGATTGTTAGCTAGGTTGTACAGTTCTGGTGAACAAACTGATACGGTGTCGGATTCAATCAGAAGTATATGTAAAACCATGATGACATGCCAAACGCTGGCGCTTGAGACTGCCCTTGACCAAAATGGGATTAGGATTTCACCTGAGATAGCTGAGGCTGTCCTCAAAAAATTTGAGAATGCCGGCATGTTAGCTTATAGGTTCTTTGAATGGGCTTCCAAACAGCGAAGCTATGTCCATAGTGTGAGGGCTTACCACTCTATGATCGAGTCTTTAGCTAAGATTAGGCAGTACCAGTTGGTCTGGGATCTGGTGAATGCTATGAGGAATAAGGAGATTCTAAATGTTGAGACATTTTGTATTATCATGAGAAAGTATGCTAGAGCTCAGAAAGTAGAGGAAGCAGTTTATACATTTAATGTCATGGAAAAATATAATATGAAACCAAATGTAGCTGCATTTAATGGATTGCTGAGTGCTCTGTGCAAATCTAAGAATGTGAGGAAGGCTCAGGAAATTTTTGACAGTATGAAGGACCAATTTGTTCCTGACTCAAAAACTTACAGCATACTCATTGAAGGATGGGGGAGGGCTCCAAATCTTCCAAAGGCAAGGGAGATTTTTAGAGAAATGATTGATAGCGGCTGCATTCCCGATATAGTGACATATAGCATTATGGTTGATGTTCTTTGCAAGGCCGGAAGAGTGGATGAAGCAGTTGAGCTTGTAAAAGAAATGGATTCTAATAATTGTAAATCATCATCGTTTGTCTATAGTGTTTTGGTACATACATATGGCGTAGAAAATCGGATTGAGGATGCAGTCTCTACGTTCTTGGAGATGGAAAGAAATGGAGTTATGGCTGATGTGGTGGCATATAATGCTTTAATCACTGCTTTCTGTAAAGCAAACAAGATTAAGAATGTTTATAGGGTGTTGAAGGACATGGACTTAAAGGGTGTTAGCCCCAATTCAAGGACTTGCAACATCATTATAAACAGCTTAATAGGCCGTGGTGAGACAGATGAGGCATTTAGGATCTTTCGTAGGATGGTCAAAGTGTGTGAACCAGATGTAGACTCCTATACCATGATCATAAAAATGTTTTGTGGGAGGAAGGAGCTTCATATGGCTCTTAAAGTCTGGCAGTATATGAAGAAGAAGCAGTTTGTTCCAAGCATGCACACATTTTCTGTTCTTATTAATGGACTGTGTCAGATAGGCAATGCTACACAAGCTTGTGTGTTGTTGGAAGAGATGATAGAGAAGGGAATCCGACCTTCTGGTGTCACATTCGGAAGGCTAAATGTCATCCAGATTCTGTTTCTTCCTTTCTTCTGTCGCAGAGGTGAACTGCAAAAGCAGAGGAAGGAAGGGGGTCAGATAATTTCTCATTACACATCAAGCTCTTCCAAGTGA 1464 40.3 MMRICSHRRNKLTVCRLLARLYSSGEQTDTVSDSIRSICKTMMTCQTLALETALDQNGIRISPEIAEAVLKKFENAGMLAYRFFEWASKQRSYVHSVRAYHSMIESLAKIRQYQLVWDLVNAMRNKEILNVETFCIIMRKYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDSMKDQFVPDSKTYSILIEGWGRAPNLPKAREIFREMIDSGCIPDIVTYSIMVDVLCKAGRVDEAVELVKEMDSNNCKSSSFVYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVVAYNALITAFCKANKIKNVYRVLKDMDLKGVSPNSRTCNIIINSLIGRGETDEAFRIFRRMVKVCEPDVDSYTMIIKMFCGRKELHMALKVWQYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKGIRPSGVTFGRLNVIQILFLPFFCRRGELQKQRKEGGQIISHYTSSSSK 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18186900 18194781 + ClCG08G005980.1 Cla08g00621 278276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00621 487 SUPERFAMILY TPR-like 95 437 IPR011990 GO:0005515
Cla08g00621 487 Gene3D Tetratricopeptide repeat domain 39 191 IPR011990 GO:0005515
Cla08g00621 487 Pfam PPR repeat family 372 421 IPR002885 -
Cla08g00621 487 Pfam PPR repeat family 164 209 IPR002885 -
Cla08g00621 487 Pfam PPR repeat family 304 350 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Cla08g00621 487 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 10 452 - -
Cla08g00621 487 Pfam PPR repeat 230 261 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Cla08g00621 487 Gene3D Tetratricopeptide repeat domain 192 331 IPR011990 GO:0005515
Cla08g00621 487 Gene3D Tetratricopeptide repeat domain 332 476 IPR011990 GO:0005515
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cla08g00621 487 Pfam PPR repeat 272 301 IPR002885 -
Cla08g00621 487 Pfam PPR repeat 133 161 IPR002885 -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cla08g00621 487 PANTHER OS03G0761300 PROTEIN 10 452 - -
Cla08g00621 487 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 202 235 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 272 304 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 236 267 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 342 368 IPR002885 -
Cla08g00621 487 TIGRFAM PPR: pentatricopeptide repeat domain 168 195 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00621 - - - mcha:111011765 832.017
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01399 Cla-Chr1:28423998 Cla08g00621 Cla-Chr8:18186900 1.40E-65 dispersed
Cla05g02634 Cla-Chr5:37544946 Cla08g00621 Cla-Chr8:18186900 7.09E-11 dispersed
Cla07g01215 Cla-Chr7:29127503 Cla08g00621 Cla-Chr8:18186900 1.85E-11 dispersed
Cla01g00542 Cla-Chr1:5924457 Cla08g00621 Cla-Chr8:18186900 6.27E-49 transposed
Cla01g00599 Cla-Chr1:6848342 Cla08g00621 Cla-Chr8:18186900 3.69E-24 transposed
Cla01g01745 Cla-Chr1:32337742 Cla08g00621 Cla-Chr8:18186900 3.35E-09 transposed
Cla02g01474 Cla-Chr2:29276570 Cla08g00621 Cla-Chr8:18186900 6.49E-16 transposed
Cla05g00050 Cla-Chr5:590080 Cla08g00621 Cla-Chr8:18186900 2.80E-10 transposed
Cla05g00522 Cla-Chr5:4836136 Cla08g00621 Cla-Chr8:18186900 8.46E-07 transposed
Cla05g01599 Cla-Chr5:27109950 Cla08g00621 Cla-Chr8:18186900 7.24E-09 transposed
Cla06g00782 Cla-Chr6:10744442 Cla08g00621 Cla-Chr8:18186900 2.21E-64 transposed
Cla07g00859 Cla-Chr7:23972578 Cla08g00621 Cla-Chr8:18186900 1.35E-11 transposed
Cla08g01038 Cla-Chr8:23081416 Cla08g00621 Cla-Chr8:18186900 1.79E-39 transposed
Cla09g00301 Cla-Chr9:2900883 Cla08g00621 Cla-Chr8:18186900 1.02E-10 transposed
Cla09g01001 Cla-Chr9:10535837 Cla08g00621 Cla-Chr8:18186900 1.21E-14 transposed
Cla10g01112 Cla-Chr10:25476340 Cla08g00621 Cla-Chr8:18186900 1.12E-63 transposed
Cla11g00479 Cla-Chr11:5490898 Cla08g00621 Cla-Chr8:18186900 4.79E-12 transposed
Cla11g01575 Cla-Chr11:29446669 Cla08g00621 Cla-Chr8:18186900 1.43E-58 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g221 . . . . . . . . . Cmo15g00663 . . . . Sed14g0950 . . Bhi04g01871 Tan11g1243 Cmetu09g0635 . Hepe02g2215 . . Cla08g00621 Cam08g1035 Cec08g0624 Cco08g0736 Clacu08g0745 . Cre08g0553 . . . Cone20ag0427 . . . . . . . Bda13g01470 . Bpe14g00395 . Bma02g00206 . . . . . . Car15g00602 . . . . . . . . . . . . . . . . Lsi08g00461 . Chy03g00757 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010579 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00621 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0