Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00622 ATGGTGTTATGTTGCTTCGAGTGGCACTTGGACGCCGTAGCCGTCGCCATGAATCGCTCTCTTCCGGCCTCCGTGATCCATTCTTATCTCTCCCCATTTCGCCCTCTCTTTCCTTCCTGTAATAATGCCAGATTTCTCGGATTCCAATTGCAGACTTGGAAGCGAATCAGGAGGCGGCTTAAGTTCGCTGTCACTGCGGAGCTCTCGAAGTCTGCATCTCTCAATTCTGGCTCGGATTTTCAGTTACCATGGATGGGTCCTGTTCCTGGTGATATTGCAGAAGTTGAGGCATATTGTAGGATCTTTAGAACAACTGAACGACTTCACTCCGTGCTGATGGATACTCTTTGCAATCCCTTAACTGGTGAATGTAGTGTTTCATATGATGTTTCACCAGGGGAAAATCCACTAATTGAGGATAAAATAGTTTCTGTTCTTGGATGTTTAGTATCTCTTCTAAACAAAGGAAGGGAGGATGTACTTTCTGGAAGATCATCCGCCATAAATTCTTTCCGGGGTGCAAATTTAGATGCAACGGAGGATAATCTTCCTCCACTAGCTGCCTTTAGGAGTGAGATGAAAAGGTGTTGCGAAAGCTTGCATGTTGCTCTTGAAAACTTTTTGACTCCTGGTGATGACCGTAGTTTGGATATATGGAGGAAACTTCAGAGGCTGAAGAATGTCTGTTATGATTCTGGTTTTACTAGGGGGGAAAATTATCCCTGCCATACATTGTTTGCCAATTGGACTCCTGTTTATCTACAGAATTTCAAGGACGAAACGTCAGCAAAAAATTCTGATGTAGCCTTCTGGAGTGGTGGTCAGGTAACTGAAGAAGGTCTGAAGTGGTTAATTGAGAGAGGATTTAAAACGATTGTTGACCTTAGGGCAGAGACAGTGAAAGACGAATTTTATAGTGCATCCTTGCATGATGCTATTGGTTCTTCAAAAGTTAAAGTGATCAAGATTCCTGTTGAAGTTAGGACTGCACCAACAGCGGATCAGGTTGAGAAGTTTGCATCGTTGGTTTCAGACGATAGCAATGGGCTGATCTATCTTCACAGTAAGGAGGGTGTGTGGAGAACGTCGGCCATGATATCCAGATGGAGGCAATATGCAACTCGCTGTGGATCACAGATTGTCTCTAATCAGACAATTGTTCCAGGCGATATTCCCCTTAGAGACACCTCTTCCAAATTGGCAGATAATCAAAATGGAGCAAAAGAGTCGCTGGAAATTTCAATAATTGAAGAAACATTTCCATGTGAAAAAGGTAGTCAATCTTTGCTGCTTGAAAGTGCTCATCATACAATGAACAGAAAAAATTATGCAGAAACTGACGAAGTTAGTCAGAATGTAAATGGAGCTTACAACAGGCCTATTCCTACACAAGATATAACATCTCCAAGAGCAGTTGATAATGGTGGGATTGAAATTGACCCTCTGAAAGCTCAGATTCCTCCATGCAATATTTTTTCAAGAAAAGAAATGTCCAACTTTTTTAAGACCAAAAAGATTTCTCCTCAAAACTACTTACACCGTCGAATGAAAACAAAAGAAAAAATTTCTACGGAGATACCTGCAAGCAAAGTTCAAAGGTTTAGTGTTAATGATAGTGATCTTAAATCTGGGATTGTTGAAGCAGGAAACTTTAATGGCAGCCCAAGTGCGAAAGATTCGTCCTCAAAGACCCAATATTTATCTACTACGAAGATAAATTATGTCAATGGTGATAGTCATGTATCTGCCAATCCTGTACTTAAAGGACTTGGAGTGGATGGAAGGAATCCTCTGACCAGTGTAGCCTCTACTGCTGTTGGAGGTAAAGTTCCGTCTAAATCAGAAACAAATGGCTTAAAGAGCAATGGTCAAGCAACTTCAGTTTCTAGCAATGTTAACGTGGAATCTGCGGAGGGAAATATGTGTGCTTCTGCCACTGGTGTTGTAAGGGTGCAATCAAGAAGGAAGGCTGAGATGTTTTTAGTTCGAACAGATGGGTTTTCATGTGCCAGAGAAAAAGTGACTGAATCCTCTTTGGCTTTTACTCATCCTAGTACACAACAACAGATGCTTATGTGGAAATCCACTCCTAAGACTGTATTACTTCTGAAAAAGCTGGGTCAAGAGCTCATGGAAGAAGCTAAAGAGGTAGCCTTGTTCTTGTATCATCAAGAGAAGATGAATGTCCTTGTCGAACCTGACATACATGACATATTTGCAAGAATTCCAGGGTTTGGATTTGTCCAAACTTTTTATAGCCAAGACACCAGTGACCTGCATGAGAAAGTTGATTTTGTAGCATGCTTGGGTGGAGATGGGGTTATTCTCCATGCATCAAATTTATTTAGAGGTGCTGTTCCCCCAGTTGTTTCATTTAATCTCGGGTCTCTTGGATTTTTGACTTCCCACACTTTTGATAGTTATAGGCAGGACTTAAGACAAGTCATTCATGGAAATGATTCACTCGATGGTGTCTATATAACTCTAAGAATGCGTCTTCAGTGTGAAATTTTCCGAAATGGGAAAGCTATTCCTGGGAAGTTATTTAATATTCTTAATGAGGTTGTTGTTGATCGAGGCTCCAATCCATACCTTTCCAAAATTGAATGTTATGAACATGATCGACTCATAACAAAGGTCCAGGGCGATGGTGTCATTGTGGCCACCCCTACCGGAAGCACTGCTTACTCTACTGCAGCCGGGGGCTCTATGGTGCATCCAAATGTTCCTTGCATGCTTTTTACTCCAATATGTCCCCATTCTCTCTCATTTCGACCAGTTATACTTCCAGACTCTGCACGACTAGAGTTAAAGATTCCCGAGGACGCACGGAGTAATGCGTGGGTTTCTTTCGATGGAAAGAGAAGGCAACAACTCTCAAGAGGAGATTCTGTTAGGATATCCATGAGCAGACATCCACTTCCAACTCCAAGCAGGTTAGCAAGGAGACCGGCTTCGAATCGTCGACGCGTCGTCAGAGAAGAGGAACCGAAAGCTTCTGCAATTGAGCTGCTGCCCGAGGCCATGGCGGGGTCTGGGAGTTCCATGCTTTACTCATTTCTTCTGTTCACTGTCATTCTTTCGCTTCAAGAGATGTATAGAGGAAAGTTGGCTTCATCGGAGTTGTTTACCATACTTGGAGGATTCGTCAGTTCTCTTCTGTTTCTAGTGCTTCTTACATTTATAGGAAACTTCCAGGAAACATGTGGCATGCGAACTGGATGGGGGGCTGTCATCGTAGCAGAAGCAGTTGCATTGATTGCTGCAAGCACTGTTCATAGAGTTTGCATCACAACATGTTTCTTGTTCTCCGCTGGACTGTTGTATGAGTTGAACAAGCTTTCGGGTGTGGCACTTTCTAAATCTGAATCTAGAGCCAAAAGGCACTGA 3390 42.57 MVLCCFEWHLDAVAVAMNRSLPASVIHSYLSPFRPLFPSCNNARFLGFQLQTWKRIRRRLKFAVTAELSKSASLNSGSDFQLPWMGPVPGDIAEVEAYCRIFRTTERLHSVLMDTLCNPLTGECSVSYDVSPGENPLIEDKIVSVLGCLVSLLNKGREDVLSGRSSAINSFRGANLDATEDNLPPLAAFRSEMKRCCESLHVALENFLTPGDDRSLDIWRKLQRLKNVCYDSGFTRGENYPCHTLFANWTPVYLQNFKDETSAKNSDVAFWSGGQVTEEGLKWLIERGFKTIVDLRAETVKDEFYSASLHDAIGSSKVKVIKIPVEVRTAPTADQVEKFASLVSDDSNGLIYLHSKEGVWRTSAMISRWRQYATRCGSQIVSNQTIVPGDIPLRDTSSKLADNQNGAKESLEISIIEETFPCEKGSQSLLLESAHHTMNRKNYAETDEVSQNVNGAYNRPIPTQDITSPRAVDNGGIEIDPLKAQIPPCNIFSRKEMSNFFKTKKISPQNYLHRRMKTKEKISTEIPASKVQRFSVNDSDLKSGIVEAGNFNGSPSAKDSSSKTQYLSTTKINYVNGDSHVSANPVLKGLGVDGRNPLTSVASTAVGGKVPSKSETNGLKSNGQATSVSSNVNVESAEGNMCASATGVVRVQSRRKAEMFLVRTDGFSCAREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEVALFLYHQEKMNVLVEPDIHDIFARIPGFGFVQTFYSQDTSDLHEKVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGSLGFLTSHTFDSYRQDLRQVIHGNDSLDGVYITLRMRLQCEIFRNGKAIPGKLFNILNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPEDARSNAWVSFDGKRRQQLSRGDSVRISMSRHPLPTPSRLARRPASNRRRVVREEEPKASAIELLPEAMAGSGSSMLYSFLLFTVILSLQEMYRGKLASSELFTILGGFVSSLLFLVLLTFIGNFQETCGMRTGWGAVIVAEAVALIAASTVHRVCITTCFLFSAGLLYELNKLSGVALSKSESRAKRH 1129
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18200325 18211155 - ClCG08G005990.2 Cla08g00622 278277

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00622 1129 Pfam ATP-NAD kinase C-terminal domain 852 973 - -
Cla08g00622 1129 MobiDBLite consensus disorder prediction 968 988 - -
Cla08g00622 1129 SUPERFAMILY NAD kinase/diacylglycerol kinase-like 701 976 IPR016064 -
Cla08g00622 1129 Pfam ATP-NAD kinase N-terminal domain 753 818 IPR002504 GO:0003951|GO:0006741
Cla08g00622 1129 PANTHER NAD/NADH KINASE FAMILY PROTEIN 76 979 - -
Cla08g00622 1129 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 270 372 IPR029021 -
Cla08g00622 1129 Gene3D Protein tyrosine phosphatase superfamily 253 386 IPR029021 -
Cla08g00622 1129 Gene3D - 832 972 IPR017437 GO:0003951|GO:0019674
Cla08g00622 1129 MobiDBLite consensus disorder prediction 601 627 - -
Cla08g00622 1129 Hamap NAD kinase [nadK]. 698 998 IPR002504 GO:0003951|GO:0006741
Cla08g00622 1129 Pfam Keratinocyte-associated protein 2 1012 1125 IPR018614 -
Cla08g00622 1129 Gene3D - 687 977 IPR017438 -
Cla08g00622 1129 PANTHER NAD KINASE 76 979 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00622 K00858 ppnK, NADK; NAD+ kinase [EC:2.7.1.23] - csv:101204002 1727.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g01261 Cla-Chr3:27037226 Cla08g00622 Cla-Chr8:18200325 2.84E-74 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g216 . . . . . . . . Cmo04g02505 Cmo15g00662 . . . . Sed01g3084 . . Bhi04g01869 Tan11g1240 Cmetu03g0963 . Hepe02g2213 . Lcy10g1253 Cla08g00622 Cam08g1036 Cec08g0626 Cco08g0737 Clacu08g0746 . Cre08g0554 Cone4ag1431 Cone7ag1504 . . . . . Cme03g00495 Blo17g00169 . . Bda13g01468 . Bpe14g00397 . Bma02g00204 . . . . . Car04g02311 Car15g00599 Cpe01g02074 . . . . . . . . . . . . . . . Lsi08g00462 . Chy03g00755 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007207 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00622 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0