Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00624 ATGGAAGAGGAAAATTTTAGTGGCGGCGCCGGCGTTGGAACTCGCACGGGAAATGGTGGTGCTGGTGATTCCTCGAGAGCTTCTTCTTCGTTCCTGAAATCAGGTGACCGCCAAATGTTCACTGTGGAGCTACGACCTGGAGAGACTACCATAGTTTCGTGGAAGAAGCTTGTCAAAGATGCCAACAAGGTTAATGGACTCAACACTGTGCCTGAACCTCCAGCCAACCCCAACCCTGCCATCGAGTGTCGCATTGATCCGGTGAGGACTTTGTTTTCACTGTGGAATGGGCAACTGATTGAAGATGAAGTGAAAGATCCAACGGCACCAAATCGTTTTAATGCTGTTATTGAGAAGATTGAGCGCCTATATATGGTACTTGGTTTCTTCTTAACACTATCAGGTAAGGATAGTAGTGACGAGGAAGATTTAATTCCAGATGATGATCAGTACGATACAGAAGACTCATTCATTGATGATACCGAGTTGGTTGGTTTCTTTCTGTTGCTCGATGAATATTTTGAAGTTGATGATTCGGCAATAAAACATGATGGATTTTTTGTTAATAGGGGGAAATTGGAGCGCATGTGGCTTCAGTATCATGCGTACAAGAATAACTTTATTCTATACTTTGAATATTTAATTTTAGACTTCCATTTATCAGTTTGCTTTTTGAAATTCTCTATGCTTATTTTTACTTATTTTCTTTCTGAAAGAAGTGAACCATCTGGACAACCTAATCAACAGTTGAAGAAAAGACGGAGAAAAGATTTAGAGAAAGGCCATCCTGAAAACCATGATGCTCGCTTATCAAATAAGCATACAAAAGTGGGAAAGACAACTACGGGAAAGAGTGCACTGATGGTTGCAAAGAATTTTTCTAATCTGTCTCAAAACATGGCGATCACACATGAACATCTTGAAGACGACAAATTGCAGAACCAATTGAATGTGCCTGGACATAGTTCCAAAAAAAAATCTGGTGATACAAAAATGATATTGGACCCTTCTCCATCTTCAAAAGTTTATAATGGTGATACCTCTACATCTGTAGCAGAAGCGAAGGACACTGATCCTCCAAAGCCTGGTGTTTTTCCATCCAAGAACCTTGGTAGCAAATCAAAAGAGTCATGTGGACCATCAGATTCTTTACAACAGAACATACTTGAAAAAATTGCACATGCACCATCCAAACCCCAACCTGGGAGACCATGCACAGATGAGATAGATTCGTCAATTCAGATGAAAGAGAAACATGGCATTCGTGAATTGCCGGACATTAATTTGCCAGAGGGCAAGTATTCCATGCAAACAGCCAAAACACCATATGTGCACAAAAAGGATGGATCTAGTGTTAGACCAAAAAGCTCCTTGCTAGAAAAAGCTATTAGAGAGTTAGAGAAGATGGTTGCCGAATCTAGGCCACCGCTTACGGAAAATCCAGAGGCAGATAATTCATCTCAGGCTATCAAAAGGAGATTGCCCAGAGAAATCAAACTCAAGCTTGCTAAAGTTGCCAGATTAGCGGCAAGCCATGGGAAATTGTCAAAGGGGTTGATTAACCGACTTATGAGTATTCTTGGTCACTTGATACAACTGCGAACTTTAAAGAGAAATTTAAAAGTCATGGTCAGCATGGGTGTCTCAGTGAAGCAGGAGAAGGATGATAGGTTTCAACAGATAAAGAAGGAAGTTATCGAAATGATTAAAATCCGGCCTTTGTCCATGGAGTCTAAGGCAATCGAACAACAAGGGGGAGCACCTCATGATATCCGCGAACTTGTTTCTGAAGAAAAAGGAGTTCTGAAAAAAAAATTTGTTATGGATCCTGCATTGGAGGACAAGATTTGTGATCTCTATGATCTGTTTGTTGATGTACTGCTTCATGGACTGGATGAGGATGCTGGTCCACAAATCAGAAAGTTGTACGCGGAGCTTGCAGAATTGTGGCCAAATGGGTTCATGGATAATCATGGGATTAAACGTGCAATATGCAGGGCAAAAGAGAGGCGGAGAGCGTTGCATGGCAGACATAAGGATCAAGAGAAAATCAAGAGGAAAAAGATGTTACCACCTAGAGTAGAAGAGACCGTTAGAACTGATGTTGGTTCAGTTGCTCAGCCACAGTATGCCCGAGAACGATTAGCCTCAGAGTCAGGTTTACAGCCAACCCCAGCAACCAAGCCTACATCTGTTTCGACAATTGCAGTGGCCCAGGTACCGAGTCCTTCCATGAGTGTTGGAAATTTAGACAGGCTAAAATCCGAGAAGTTGAAGGTAAGCTCAAGCAGTTCCCACGAGGATGCAAGAATGGTGGACGGTGCCTTAACCAAGAAAAAGACAAAGAGGAAGGCAGAGCTGGAGTTGGACGAAACTCATAATCGCCCTGAAAAGGCATCCATCCAACATGGAGATGAAAAACACAAGTCCATGAACAAGCCAACTGCCAGTCTTCCTCCTAAGCCAACAATTCAATCAGCTGCTCCTTCAAGTCTGGAACAGTCAAGCTAA 2511 42.29 MEEENFSGGAGVGTRTGNGGAGDSSRASSSFLKSGDRQMFTVELRPGETTIVSWKKLVKDANKVNGLNTVPEPPANPNPAIECRIDPVRTLFSLWNGQLIEDEVKDPTAPNRFNAVIEKIERLYMVLGFFLTLSGKDSSDEEDLIPDDDQYDTEDSFIDDTELVGFFLLLDEYFEVDDSAIKHDGFFVNRGKLERMWLQYHAYKNNFILYFEYLILDFHLSVCFLKFSMLIFTYFLSERSEPSGQPNQQLKKRRRKDLEKGHPENHDARLSNKHTKVGKTTTGKSALMVAKNFSNLSQNMAITHEHLEDDKLQNQLNVPGHSSKKKSGDTKMILDPSPSSKVYNGDTSTSVAEAKDTDPPKPGVFPSKNLGSKSKESCGPSDSLQQNILEKIAHAPSKPQPGRPCTDEIDSSIQMKEKHGIRELPDINLPEGKYSMQTAKTPYVHKKDGSSVRPKSSLLEKAIRELEKMVAESRPPLTENPEADNSSQAIKRRLPREIKLKLAKVARLAASHGKLSKGLINRLMSILGHLIQLRTLKRNLKVMVSMGVSVKQEKDDRFQQIKKEVIEMIKIRPLSMESKAIEQQGGAPHDIRELVSEEKGVLKKKFVMDPALEDKICDLYDLFVDVLLHGLDEDAGPQIRKLYAELAELWPNGFMDNHGIKRAICRAKERRRALHGRHKDQEKIKRKKMLPPRVEETVRTDVGSVAQPQYARERLASESGLQPTPATKPTSVSTIAVAQVPSPSMSVGNLDRLKSEKLKVSSSSSHEDARMVDGALTKKKTKRKAELELDETHNRPEKASIQHGDEKHKSMNKPTASLPPKPTIQSAAPSSLEQSS 836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18215685 18231644 - ClCG08G006020.2 Cla08g00624 278279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00624 836 MobiDBLite consensus disorder prediction 671 709 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 752 812 - -
Cla08g00624 836 Pfam HPC2 and ubinuclein domain 137 194 IPR014840 -
Cla08g00624 836 MobiDBLite consensus disorder prediction 743 836 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 340 354 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 240 281 - -
Cla08g00624 836 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 25 196 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 310 382 - -
Cla08g00624 836 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 25 196 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 1 32 - -
Cla08g00624 836 PANTHER CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS 239 836 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 248 274 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 816 836 - -
Cla08g00624 836 MobiDBLite consensus disorder prediction 18 32 - -
Cla08g00624 836 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 239 836 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00624 - - - csv:101204246 1295.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00623 Cla-Chr8:18213674 Cla08g00624 Cla-Chr8:18215685 2.00E-153 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g214 . . . . . . . . Cmo04g02506 Cmo15g00661 . . . . . . . Bhi04g01866 . . . Hepe02g2212 . Lcy10g1255 Cla08g00624 Cam08g1038 Cec08g0628 Cco08g0738 Clacu08g0748 . Cre08g0556 . . Cone17ag0820 Cone20ag0424 . . . . Blo17g00168 Blo18g00174 . Bda13g01467 Bpe02g01656 Bpe14g00398 Bma01g00799 Bma02g00203 . . . . . Car04g02312 Car15g00598 Cpe01g02075 . . . . . . . . . . . . . . . Lsi08g00463 . Chy03g00754 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003468 4 3 2 2 2 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 4 1 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00624 Cla_Chr08 FPKM 0.357521 0.113433 0.505643 0.230794 0.44541 0.396716 0.355847 0.214642 0.205306 0.144578