Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00625 ATGGGTTCATGTGATGACCCGGCTGTGATCGGGGAACCGTTTTGCGGCTCTGTTACTCGGCTGGTCGGGTGTTCGAGTCAACCTCTCTCCAAGCATCAGTCACGCCAGGAGATGTCTTCCTTTCCATCTAATTCTAGTGACGGTCAGATGTTTGAGCCAGATAGGGGACTGGGAGTGACTACGACTGATGTTTGCACCAATGCATCGGAGCCTGATACTGCAGGGGAGGAAGGGACATGTAGAGGCTTCGAACATGCAGATGCTTTGCTAATGGATAAAAGTTTGGATAGTGATCCCTGTTTAAACGAGGATAACGAGGCTTGCAACATGCGGGATAGAACATTGAGCTTGGATATGAAAGAGTCTCAAGATGTTGATGGTTTGGTTGATATTTTGGACTGCAAAACTACCATGGAAATGATGTCTTTAACCGGGTCATTAGTAGATTCTGTTAAACCCGAAGAACTTGATAATAATAGTTGTATAATTGATGCTTCTGCAAAAGTCGTAAGAGATGATACTGTAGAAAATGGTCCTATTTTAGCACGGATGGGTACTTGTACAGATGACTTTAAATCTCCTTATGTCTGTGAAATTGTTTCTAATTCAGCTACTGCCAATGGGCTGGCATGTGATTTCATACAACACAACGAGCTGCAAAATGATGGTGCTGGTTGTTCATTTTCAGAGGTTGCAGACAGGATAACTGAGGCTTCGGTTGAAATAGAAGCAGATATGTTGAATGAGATGTCACCTTTACAGAGTGGTCAAATACTACCAATACACGTGGAACAATCAGTTGCCAATTGTGATCGGCATGTTTGCCAGATGGATGGGAAGAGCCTAAGTGGTACCACTGGAGAAACAGTTATTGAAGTTGCTGATATGGACAGCAATCCTGAAGTGTGCTTGCAAATGTTGTCTTCACAAGGATGCCAGAGGATTGGGGAATGCTTGCAATCTGATGGTTCACCACTAACCATCCATGCTCCAGAGAATGATTGGTGTGATGAAAAACTTGACAGTAATTCGTCCAAGTACAATCCAGAGGTCGTGGAAGACGATATTGATGTCTTGACTAATAATAATAGTGATGGTGGACAACATATAGTTCCCGGGATTGAAAGTGACTGCAATCTGGAGGAAGCTACTATTCAAGTGAACCACAACTGTGTTGAACTACTTGCATCACCCTTGCCTTCTCAGCCCCCTAATTCTGAAAAGGATGAATTTTATGGGATGTTGAATGGAGCAGATATTCCAATAAAGGATATTAGTTCTGTTAATTCATGTAGTGTCGGTGATCAAGACAACAATGACATAGAGAAAGTTGGCTGTGTTTCTGAAGTTAAATGTCCTGAAACAGTTATCATGTCTTCAAAGAGGAGTGGCCGAAGGAGAACGTCAAGCCAAAAAGCTGTGACAAAAAGGGCATCCAGGAAGAGCAAAAAAAAGGTGCCAGAGCCACTGATTTTTGACACTGCAAGAAGGAGGAGAAGCTCTATATCTAGGCCTGCTCGTCCCTCACCCTGGGGATCACTGGGCTATATTATTCAGTCATTTGAAGAAATTGATGATGTTCTGGTAAATCAAAGCCAGAAGCAAGGAAATGAGAAATCTAAAGGTAATCAAAGAGGTACCAAGAGGAATAAGAAACAGCCAAGTGAAAGTTCTCATAGATCAAGAAAAGGGACCCAAGGAAAATGTGCTACTTCCACTTCAACCAACCGTATTCGTCTGAAGGTTAAATTAGGGAAGAATGTGGGCCATAATTTTCTGAACATTGTGGTTCCCGATATTGTGGATTCATCATTGTCTGCAAAGGGTGTCAATTGCAATTATGGTAATGAATCATATTGGGAAGGCAATTTGGAATTTCCACCATCAACCCTTGGTGTTGATGAACAAAAGCCCGAAGAGGGGCCTTTAAGAAAGATCTTCTGCTACAGCAGGAATCAGGATAAAGAAGAGAAATGTCCTGATGCTGATGCTGATGCTGATGCTGATGCTTCTGTTGTGAATGAACATTGTGCTAATAATGACTCAAGTTGCACCATTATTATGGACAAGCCATCTGCAAAACTTGCAGATGATAATCTTTGTGTTTCCTCCCATTTGGTTGAACCTGTAGAAAGGGCAAGTGATGCCAGGAATTCGGATCCTGGAACTTCACCTGATTCAGAAGTGATAAATTCAATTTTAGATATTCAAGTTGGAGCAATACGTCAGGAAATTTTGCAGGACTCAGTTTTGGCATCTTTAGAAGATTTTTCTGCTTCTGAAAATGCTGCCAGTAGTAAGAAAGGAAGGAAGAAGGAGAAGTCCTGTCAGGCAGTTAATTGTTCTGAGGAAGGTGGCACAGGTGCTTCTGCTTGTAGTAACAGGTCCAAGTCATCAAAGAAGCATGGAAGAAGACAGAACGTGGACAATCAACTTGGTTCTGAGATTGAACTTCCAGAAGAGGCTTTGAAAGCAGACGACATTCTCAAAGATAAAGAATGTTGCAGAACAAATGTTGGCAGTGTGTTTCCTGAATCAGAGAATTCAAAAACATTTCTTCCTTCTCAATCTGCAAAGAAGAAACATTCTAAAGGTTCCAAATCTATTAAAACAAGCAAAGGGAAGGTGAAGGCTCCTGGCTCAAAAAACAAAACAAAGAATGCTTCAAATGAGAGGGTTTACCAACGGAAGTCTTTAAATAAGAGTAAAATTAAGGAGGCTCTATGTGACCGAGTTGTGACTGAAACGGAAAGTCACCAAATAGTAGGAAATTGCGTTGTAGACAAGCCTGTGAAAAGCGATGACATCATTGCATCCACAGTGGCAGAAAATTTGAGTGTGGTACAGGGTGCTGTGAATGAGCAGTATATGCCTCCTCGCAATGCTTGGGTGCTCTGCGATGATTGTCATAAATGGCGACGCATACCGGCTTCTCTTGTTGATAGTTTAGGACATGCAAGTTGCACATGGACTTGTAAGGACAATGTGGATAAAGCTTTTGCTAATTGTTCAATCCCACAAGAAAAGTCAAATGCAGAGATTAATGCAGAGTTGGAAATATCAGATGAATCTGGGGAAGAAAATGCTTCCAATAAACGGCTAACTTACAGGGAGTTGGAGAGTTTCCATCCAACAACAGTGACTGCTGTTCCTCAAGAGAACAAATTTGCTTCCATTAGCAGCAATCAGTTTTTGCACCGCAGCCGTAAAACTCAGACTATTGATGAGATAATGGTTTGTCATTGCAAACCAACTTTGGATGGTCGGTTAGGCTGTGGAGACGAATGCTTGAACCGAATGCTCAATATTGAATGTGTTCGAGGTACATGTCCATGCGGGGACCTCTGTTCTAATCAACAGTTCCAGAAGCGCAAGTATGCTAAATTACAGTGGTTGCGATGTGGAAAGAAAGGTTATGGGCTACAGTTGCTTGAGGATATATCAAAAGGACAATTTCTCATTGAGTATGTTGGAGAGGTCCTTGACATGCATGCTTATGAGGCACGCCAAAAGGAATATGCATTGAATGGTCATCGGCATTTTTACTTCATGACACTAAATGGCAGTGAGGTCATAGATGCATGTGGAAAGGGAAATTTGGGGCGTTTCATTAACCACAGTTGTGATCCAAATTGCCGCACGGAGAAGTGGATGGTGAATGGAGAAATCTGCATTGGGCTCTTTGCACTAAGGGATATTAAGAAGGGGGAAGAGGTCACATTTGACTACAATTATGTAAGGGTATTTGGGGCTGCTGCAAAAAAATGTTATTGTGGTTCTTTCCAATGTCGAGGTTATATAGGTGGAGACCCCCTCAATTCTGAGGTCATTATTCAAAGTGATTCAGATGAAGAATTCCCAGAACCAGTGATGCTTCGTGCAGATGGTAGAAGTTGGAATAATAACTTGCCAACTGCAGTTAGTTCGGTGGATGTTGCTAAAATGCAACCCTCAGAGCATATAAAAGGGATTAGGGATAAGAGAGATCAACCTATCAGAATTGCTACTGAACCGAAGATTTCAGAAGAAAAGGTGGATACTCTTAAGCTTTCTGCCTCGCAGATTTCAGAAGAAAGAGAGGATCCTCTTGATCTTTCTGCATCGAAGATTGCAGAAGAAAAAGAAGATCCTCTTAACCTTTCTGCCTCTACCATTTCACCATTGCACAGTTCATTGGAATTCGAAGACTCAAAGGTAGCATCACCTACTCCACTGCTGGATATTACCCATCAGACTGAAGATGTGACGAGCAAACCTGTCTTTGTTGATCAGACAGAAATTTCTCTTGTGGACAATACTCCTGACAAAAATACATGCTCTATTGAGCAGGAGGCAAAGTTATCAGTTGATGACATTGATGCTCCTAAAAAGTCCAAGCTGGATGCTGTTGAAGATAAGGAAGTGTATATAAAATCGCATCCTCGGATGAAAACTTCACGTAAACCAGGTTCCATCAAGAAAGGAAAAGTTAGCTCGGTCGAAAAAATTCAAATAACTAACAGGTCCCAGATTTCCTCTGTGAAGCCCAAGCGATTGATTGAAGGCTCTCCGGGTAACCGTTTTGAAGCAGTTGAGGAGAAGCTTAATGAACTTCTGGATGCTGAAGGGGGAATTAGCAAAAGAAAAGACGCCCCTAAAGGGTACTTAAAGCTTCTTCTTCTGACTGCTGCATCGGGTGCAAGTGCTAGTGGTGAAGCAATTCAGAGCAATCGAGATCTTTCAATGATCCTTGATGCTCTTTTGAAGACAAAGTCACGAGTAGTATTGACTGACATAATAAACAAAAATGGTTTGCGGATGCTGCATAACATAATGAAGCAATATAGAAGTGACTTCAAAAAGATACCTATTCTTCGGAAGCTTTTGAAGGTCCTAGAATACTTGGTGACGAGAGAGATACTCACCTCAGAGCATATTAATGGAGGTCCTCCTTGCCCTGGAATGGAAAGTTTGAGGGAGTCTTTACTGTCACTGACAGAGCATGATGACAAACAGGTACATCAAATTGCACGAAGTTTTCGGGACAGATGGTTCCCCAGACATACTAGAAAGTTTGGTTACTCTGAGAGGGAGGATGGAAGATTGGAAGGTTACAGGGGTTCCAACTGCAGTAGGTTTACAGCATCACACAGTTATCGGCATGATCAGGATTCCAGACCCACGGATGCAATTGATTGTGTCAAGCAGTCGATGCCTACATCTTTGCCAGATGCTCATCCTGCAGAGGTCTGTTCTGTGGCTTCCACAGCTGGTCACTCATTGAGTGGACAAAAAGTCCGTAAGCGTAAGAGCCGATGGGATCAGCCTGCAGACACAAGCCTAGATCTGAGATCCAAGGAGCAGAAGCTTGAATCAGCATCAGTGCAGCAATTATATTCCAGCCAATTAAATAGTGCTGGAGTGGCGTCAATGTTGATAGACACACTAAACAATGATGATAAGGACGTCTCCCTCTCTGATTCTGTTGGAGTACGTTGTCGGCAAGATGAAGATATTAGGGCAGACAGTGCAGTGCAGAACATCCCTGAAGATATTCCTCCTGGATTTTCATCTCCCTTCAATCCCCACATGGCTTCCTCAAGTGCTTTTTCAACAGCTTTAGATCCTCAACAGAATATTAACGATTTGAGTTGTGCTTTTTCCACGGTTGGGCACCCACAGGAAAGATTTATTTCTCGCATGCCTGTGTCCTATGGAATTCCATTTTCTATCATTGAGCAATGTGGAACATCCCGTACAGAGAATCTGGAGTGTTGGGATGTTGCTCCTGGAGTGCCTTTTCATCCTTTTCCACCCCTGCCACCATATCCTCGAGGTAAGAGAGGCCCGCCTACATCTGCCTGTGGTAGTGCAGTTGGACAGTCCTCTCAAGAAGGGCAGGTCAACAGCCATGATTCTCGAGCTTCTTTCTCAGAAGAAAGCCCTCCTAGTACAAGTACTAATTACCAACCAGATTTGTGCACCCCATCAAACAACCAACAGATAATACCGAAACGGGCAAAAGAATTGTCTTATGACTTGGGAAGAAGGTACTTTAGGCAGCAAAAGTGGCGTAATACAAAGTATGGCCCACCTTGGTTACAGAGAAGAAATCAGTGGGGATGCCAGGGAAACTTCAGGGGTGGGGTGAGCACTATAGGTGATGACAATATATCCAATGAAGAAATAAGTCCATATTGCTCGGATGAAGCAAGTGGTAGAGTGGATAAAGCTAATGATGATTTTTATCAGCATTTGCAGAATCAAAATCTGCATTGA 6258 42.62 MGSCDDPAVIGEPFCGSVTRLVGCSSQPLSKHQSRQEMSSFPSNSSDGQMFEPDRGLGVTTTDVCTNASEPDTAGEEGTCRGFEHADALLMDKSLDSDPCLNEDNEACNMRDRTLSLDMKESQDVDGLVDILDCKTTMEMMSLTGSLVDSVKPEELDNNSCIIDASAKVVRDDTVENGPILARMGTCTDDFKSPYVCEIVSNSATANGLACDFIQHNELQNDGAGCSFSEVADRITEASVEIEADMLNEMSPLQSGQILPIHVEQSVANCDRHVCQMDGKSLSGTTGETVIEVADMDSNPEVCLQMLSSQGCQRIGECLQSDGSPLTIHAPENDWCDEKLDSNSSKYNPEVVEDDIDVLTNNNSDGGQHIVPGIESDCNLEEATIQVNHNCVELLASPLPSQPPNSEKDEFYGMLNGADIPIKDISSVNSCSVGDQDNNDIEKVGCVSEVKCPETVIMSSKRSGRRRTSSQKAVTKRASRKSKKKVPEPLIFDTARRRRSSISRPARPSPWGSLGYIIQSFEEIDDVLVNQSQKQGNEKSKGNQRGTKRNKKQPSESSHRSRKGTQGKCATSTSTNRIRLKVKLGKNVGHNFLNIVVPDIVDSSLSAKGVNCNYGNESYWEGNLEFPPSTLGVDEQKPEEGPLRKIFCYSRNQDKEEKCPDADADADADASVVNEHCANNDSSCTIIMDKPSAKLADDNLCVSSHLVEPVERASDARNSDPGTSPDSEVINSILDIQVGAIRQEILQDSVLASLEDFSASENAASSKKGRKKEKSCQAVNCSEEGGTGASACSNRSKSSKKHGRRQNVDNQLGSEIELPEEALKADDILKDKECCRTNVGSVFPESENSKTFLPSQSAKKKHSKGSKSIKTSKGKVKAPGSKNKTKNASNERVYQRKSLNKSKIKEALCDRVVTETESHQIVGNCVVDKPVKSDDIIASTVAENLSVVQGAVNEQYMPPRNAWVLCDDCHKWRRIPASLVDSLGHASCTWTCKDNVDKAFANCSIPQEKSNAEINAELEISDESGEENASNKRLTYRELESFHPTTVTAVPQENKFASISSNQFLHRSRKTQTIDEIMVCHCKPTLDGRLGCGDECLNRMLNIECVRGTCPCGDLCSNQQFQKRKYAKLQWLRCGKKGYGLQLLEDISKGQFLIEYVGEVLDMHAYEARQKEYALNGHRHFYFMTLNGSEVIDACGKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEEVTFDYNYVRVFGAAAKKCYCGSFQCRGYIGGDPLNSEVIIQSDSDEEFPEPVMLRADGRSWNNNLPTAVSSVDVAKMQPSEHIKGIRDKRDQPIRIATEPKISEEKVDTLKLSASQISEEREDPLDLSASKIAEEKEDPLNLSASTISPLHSSLEFEDSKVASPTPLLDITHQTEDVTSKPVFVDQTEISLVDNTPDKNTCSIEQEAKLSVDDIDAPKKSKLDAVEDKEVYIKSHPRMKTSRKPGSIKKGKVSSVEKIQITNRSQISSVKPKRLIEGSPGNRFEAVEEKLNELLDAEGGISKRKDAPKGYLKLLLLTAASGASASGEAIQSNRDLSMILDALLKTKSRVVLTDIINKNGLRMLHNIMKQYRSDFKKIPILRKLLKVLEYLVTREILTSEHINGGPPCPGMESLRESLLSLTEHDDKQVHQIARSFRDRWFPRHTRKFGYSEREDGRLEGYRGSNCSRFTASHSYRHDQDSRPTDAIDCVKQSMPTSLPDAHPAEVCSVASTAGHSLSGQKVRKRKSRWDQPADTSLDLRSKEQKLESASVQQLYSSQLNSAGVASMLIDTLNNDDKDVSLSDSVGVRCRQDEDIRADSAVQNIPEDIPPGFSSPFNPHMASSSAFSTALDPQQNINDLSCAFSTVGHPQERFISRMPVSYGIPFSIIEQCGTSRTENLECWDVAPGVPFHPFPPLPPYPRGKRGPPTSACGSAVGQSSQEGQVNSHDSRASFSEESPPSTSTNYQPDLCTPSNNQQIIPKRAKELSYDLGRRYFRQQKWRNTKYGPPWLQRRNQWGCQGNFRGGVSTIGDDNISNEEISPYCSDEASGRVDKANDDFYQHLQNQNLH 2085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18263987 18289296 + ClCG08G006030.1 Cla08g00625 278280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00625 2085 MobiDBLite consensus disorder prediction 1932 1991 - -
Cla08g00625 2085 Gene3D SET domain 1023 1284 IPR046341 -
Cla08g00625 2085 ProSiteProfiles AWS domain profile. 1075 1125 IPR006560 GO:0005634|GO:0018024
Cla08g00625 2085 CDD SET_SETD2 1126 1268 IPR044437 GO:0010452|GO:0046975
Cla08g00625 2085 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 465 2001 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 774 814 - -
Cla08g00625 2085 SMART shorttest3 1075 1126 IPR006560 GO:0005634|GO:0018024
Cla08g00625 2085 MobiDBLite consensus disorder prediction 530 574 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 1760 1774 - -
Cla08g00625 2085 Pfam CW-type Zinc Finger 963 1009 IPR011124 GO:0008270
Cla08g00625 2085 MobiDBLite consensus disorder prediction 845 895 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 484 500 - -
Cla08g00625 2085 ProSiteProfiles SET domain profile. 1127 1244 IPR001214 GO:0005515
Cla08g00625 2085 ProSiteProfiles Post-SET domain profile. 1252 1268 IPR003616 -
Cla08g00625 2085 PANTHER SET DOMAIN PROTEINS 465 2001 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 845 859 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 780 796 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 457 509 - -
Cla08g00625 2085 Pfam AWS domain 1089 1124 IPR006560 GO:0005634|GO:0018024
Cla08g00625 2085 MobiDBLite consensus disorder prediction 465 483 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 1750 1774 - -
Cla08g00625 2085 Pfam SET domain 1138 1244 IPR001214 GO:0005515
Cla08g00625 2085 SMART set_7 1127 1250 IPR001214 GO:0005515
Cla08g00625 2085 MobiDBLite consensus disorder prediction 1948 1991 - -
Cla08g00625 2085 SUPERFAMILY SET domain 1056 1265 IPR046341 -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 541 563 - -
Cla08g00625 2085 Gene3D - 960 1020 - -
Cla08g00625 2085 MobiDBLite consensus disorder prediction 29 50 - -
Cla08g00625 2085 ProSiteProfiles Zinc finger CW-type profile. 957 1011 IPR011124 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00625 - - - bhj:120075567 3684.8
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g01264 Cla-Chr6:25873556 Cla08g00625 Cla-Chr8:18263987 1.40E-38 dispersed
Cla08g00625 Cla-Chr8:18263987 Cla08g00919 Cla-Chr8:21730274 1.09E-21 dispersed
Cla10g01090 Cla-Chr10:25106633 Cla08g00625 Cla-Chr8:18263987 7.63E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g211 Blo01g01308 . Bda01g00676 . Bpe02g00629 . . Bma01g02090 Cmo04g02507 Cmo15g00659 . . . . . . . Bhi04g01862 Tan11g1236 . . Hepe02g2211 . Lcy10g1258 Cla08g00625 Cam08g1044 Cec08g0630 Cco08g0742 Clacu08g0751 . Cre08g0560 . . Cone17ag0818 Cone20ag0423 . . . Cme03g00490 . . . . . . . . . . . . . Car04g02314 Car15g00596 Cpe01g02076 . . . . . . . . . . . . . . . Lsi08g00466 . Chy03g00750 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003381 1 5 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 2 1 6 3 1 48
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61535 PF00856 SET 3.70E-18 No_clan Cla TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00625 Cla_Chr08 FPKM 1.77906 1.534982 1.164861 0.788622 7.601036 9.939998 8.469155 0.794733 0.674674 1.304908