Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00627 ATGAAATTCCTCCAAAATGGGGTCGCCGGCGAGTCACTCCAAGTTGATTCCGGCCGAACTGTGCTGGTCGGCATGAAATTGGACTCTCATAGCAGAGAGTTGCTAACTTGGGCTTTGGTTAAAGTTGCTCAGCCTGGTGACCTTGTGATCGCTCTTCATGTTCTTGGCAACGATGAAATTGTGAATCAAGATGGGAAATCTTCGCTTCTTTCTCTTGTAAAAGCGTTCGACTCTGTGCTGGCTGTGTATGAAGGTTTCTGCAACTTGAAGCAGGTGGATCTGAAGCTCAAGATCTGCAGAGGAGAATCGGCTAGAAAAATATTAGTTCGTGAGGCAAAATCATATCGCGCTACTAACGTGATTGTTGGGACTGCTCGTAAGCACCACAAAATCCGTTCATCGACTTCTGTTGCCAAGTACTGCGCCAAGAAGTTACCCAAAGATTTTTGGGTACTCGCTGTTCATAATGGCAAAGTGATTTTCGAACGACAGGGCTGTCCAGTGGTCGCAGAGGACTGCCAAGGAAATCAGGAACAACGCCATAGCAATTTACTTGCTGCAGTTTACGGATCGTCGGTTAGCCCTCCCAAAGTTCAAAGCGGTGAGAGTTTTGGATCTCTGTTGGCGAGAGACGGAGGTAATCTGGGAATTGGTAAGAATTCTGATCAGGGATTAGCAAAAGCCATATTAGTTAGTACTGATCAACAGAACTGCTCAATTTGTGGATCGGAGTCGAATTCTGTGGAACAATCTGCAGAGATATCTTCTGGTGATGGAGAAAAACATGATGAATCTTTGGCTATAGTTCCAGTTCAAAAAGTCGAGGTAGCTTCGAGCTCGATTACTAAGTTGATCAAGCAATTGCCTGAAGTGAAACCAGGTTGGCCTCTGCTTCGACATGTTGATCAGTCGTGTGAATCAGGTCGACAAGCTTCTTCGGACAGATCGTTGGCAAAGCAAATCTCTGTAGTTCAGTGGGCAATGAGGTTACCTAGCCGGTCTCCTTCTTATCCTGCTGCTTTGGATTACAAATCTAACACCTCTGAGCAATCTTTGGGTCTTGATGGGGAAAATGGAGCTATGGTTCTGGTGGGTTCTGAACCAGCGACTTCTCCACTTTCCGCCGACTCTGATTCCGAAACCTTACCTGAAGAATTGGAAGGTTTCCATGAGAAATACTCATCAACCTGTAGATTATTTAATTATCATGAACTCCTTACAGCAACATCTAATTTCTTACCCGAAAATTTGATTGGGAAAGGAGGAAGCAGCCAAGTTTTTAGAGGTTGCCTTCCTGATGGCAAGGAGGTTGCTGTGAAGATCTTGAAGCCATCAGAAGATGTTCTGAAGGAGTTCGTTATGGAAATTGAGATCATTACCTCCTTAAGCCACAAGAATATTATTTCTCTTTTGGGATTTTGCTTTGAAAATGGCAAGTTCTTGCTGGTCTATGATTTTCTATCAAGAGGATGTCTTGAAGAAATCCTTCACGGGAATAGAAAGAATCCAAATACATTTGGTTGGAGTGAAAGATATAAGGTAGCTGTTGGTGTAGCTGAGGCATTGGAGTATCTCCATCAAGATGCTCAGCATGTGATCCATAGGGATGTTAAATCGTCAAACGTTTTGTTATCTGACGATTTCGAACCACAGTTGTCAGATTTTGGTCTGGCTAAACGAGCGTCAAACTCGTCGCACGTAACCTGTACGGATGTTGCAGGAACCTTCGGTTACCTGGCTCCTGAGTATTTCATGTACGGCAAGGTAAATGACAAGATTGATGTCTATGCTTATGGTGTGGTACTCCTTGAACTTCTTTCTGGGAGAAAACCGATAAGCACCGAATATCCAAAAGGACAAGAAAGCCTGGTCATGTGGGCAAGGCCAATTTTAATTGATGGTAAGGTGTCTCGATTACTCGATCGTAGCTTGGGAGGTAACTACAACCCAGAAGAGATGGAGCGAGTGGTTCTTGCAGCGAGCCTTTGTATCAGACGTGCCCCACGAGCTAGACCTCCAATGAGCCTTGTTCTGAAACTTCTCCAAGGTGATGTAGATGTAACCAAGTGGGCAAGGCAACAGATCAATGCTCTAGGGGATTCCAACACTCTAGATGATGAAGTATGTCCTCGATCTGATATCCAATCACATCTCAACCTTGCACTGCTCGACGTCGATGACGATTCGCTCTCCCTGAGCAGCCTTGAACAGAGTATTTCATTGGAGGACTATTTGCAAGGCAGATGGAGCCGATCATCGAGTTTCGACTAA 2271 44.74 MKFLQNGVAGESLQVDSGRTVLVGMKLDSHSRELLTWALVKVAQPGDLVIALHVLGNDEIVNQDGKSSLLSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGESARKILVREAKSYRATNVIVGTARKHHKIRSSTSVAKYCAKKLPKDFWVLAVHNGKVIFERQGCPVVAEDCQGNQEQRHSNLLAAVYGSSVSPPKVQSGESFGSLLARDGGNLGIGKNSDQGLAKAILVSTDQQNCSICGSESNSVEQSAEISSGDGEKHDESLAIVPVQKVEVASSSITKLIKQLPEVKPGWPLLRHVDQSCESGRQASSDRSLAKQISVVQWAMRLPSRSPSYPAALDYKSNTSEQSLGLDGENGAMVLVGSEPATSPLSADSDSETLPEELEGFHEKYSSTCRLFNYHELLTATSNFLPENLIGKGGSSQVFRGCLPDGKEVAVKILKPSEDVLKEFVMEIEIITSLSHKNIISLLGFCFENGKFLLVYDFLSRGCLEEILHGNRKNPNTFGWSERYKVAVGVAEALEYLHQDAQHVIHRDVKSSNVLLSDDFEPQLSDFGLAKRASNSSHVTCTDVAGTFGYLAPEYFMYGKVNDKIDVYAYGVVLLELLSGRKPISTEYPKGQESLVMWARPILIDGKVSRLLDRSLGGNYNPEEMERVVLAASLCIRRAPRARPPMSLVLKLLQGDVDVTKWARQQINALGDSNTLDDEVCPRSDIQSHLNLALLDVDDDSLSLSSLEQSISLEDYLQGRWSRSSSFD 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18303997 18307916 + ClCG08G006040.1 Cla08g00627 278282

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00627 756 CDD USP_Like 20 154 - -
Cla08g00627 756 Gene3D Phosphorylase Kinase; domain 1 378 486 - -
Cla08g00627 756 Gene3D HUPs 18 155 IPR014729 -
Cla08g00627 756 Gene3D Transferase(Phosphotransferase) domain 1 487 698 - -
Cla08g00627 756 CDD STKc_IRAK 418 683 - -
Cla08g00627 756 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 19 151 - -
Cla08g00627 756 SUPERFAMILY Protein kinase-like (PK-like) 393 687 IPR011009 -
Cla08g00627 756 Pfam Universal stress protein family 19 151 IPR006016 -
Cla08g00627 756 PANTHER - 13 739 - -
Cla08g00627 756 ProSiteProfiles Protein kinase domain profile. 412 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00627 756 Pfam Protein kinase domain 416 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00627 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Cla08g00627 756 SMART serkin_6 412 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00627 756 PANTHER OS08G0249100 PROTEIN 13 739 - -
Cla08g00627 756 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00627 - - - csv:101203034 1358.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00030 Cla-Chr2:381979 Cla08g00627 Cla-Chr8:18303997 0 dispersed
Cla02g01167 Cla-Chr2:25114788 Cla08g00627 Cla-Chr8:18303997 2.06E-24 dispersed
Cla08g00627 Cla-Chr8:18303997 Cla11g01200 Cla-Chr11:25119407 8.03E-08 dispersed
Cla08g00627 Cla-Chr8:18303997 Cla11g00221 Cla-Chr11:2548037 2.10E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g209 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . . Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . Csa04g01957 . Cme03g00489 Blo17g00166 Blo18g00172 . Bda13g01465 Bpe02g01658 . Bma01g00797 . . . . . . Car04g02316 Car15g00595 Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . Chy03g00749 .
Vvi18g1149 . . . . . . . . Cmo04g02508 Cmo15g00658 . . . . . . Cpe13g00644 Bhi04g01860 . . . . . Lcy10g1259 Cla08g00627 . . . . . . . . Cone17ag0817 Cone20ag0422 . . . . . . . . . . . . . . . . . Car04g02316 . Cpe01g02077 . . . . . . . . . . . . . . . Lsi08g00467 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004130 2 1 2 2 1 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 1 1 1 1 0 3 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80727 PF00069 Pkinase 1.80E-44 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00627 Cla_Chr08 FPKM 11.405275 15.364672 14.175773 13.309173 16.891743 16.41954 18.984377 14.707829 12.629219 15.022262