Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00630 ATGTGCGTTTGGGCTTTCAGCCCGACGATGAGATTCGACCCGCTATTGATCGAGAACCTGTCCGTTCGTTCCGAATGCGAAAAAAGTTCTGCCTGTTCGTACAGAGGGTTGGAGACGACGATGAAGCTCACATGGAAGAACAAGGGCAATAGTAAGAAGCGATCTCTCGCAGCAGTTTCAAGCCGTTCAAATCTTCCTTTTGAGGTGCCTATCGAGGTTGAGGAACACGATAGGGCTAATCGCCAAGATAAAGAATTAAACCTTGAGGCGGTAGACCGGAGAGAGGATGGAGCTTCAGACCGTTCGTTTTCAGACCTCAAACGTCTCGCTGAATCATTTCAGGCTCAAGGCGATACGCTAGCCGAGGTACATGGTGGGAAATTTCGGGAAGCTCTGGGAAAATGGGAGACTGCTATTACTTTGATGCCTGAAAATGCAGTTTTACATGAACAAAAGGCACAAGTTCTACTGGAGGTTGGAGAAGCTTGGGGTGCTTTGAAGGCAGCAACCAGAGCTACTGACTTAGATCCATCATGGGCTGAGGTACAACTAACTCTTATACTGTCAGTACAATACCCATATCTCTGCAACGCCTTTTACTCCACATTTAAAATTGTGTCCTTTTTTCGTCTTCCATGGGTTTTGTCTCAGGCGTGGATCACTCTTGGTAGAGCACAATTAAACTTTGGGGAACCTGATAGTGCTATAGAAAGCTTTGACAGAGCACTGGCCATAAAGCCTGATTCTGGAGACGCCCGAGATGATCGACAGACTGCAATGCATCTTATAAAGCGGCGAAAACAGCTCCATTCAGCTGGGTTGAGCAGTTCTAAAAATCGTTATTTGGTGGGAGAGAAGTTGAACAATGCTGATGGTTCATGA 882 46.49 MCVWAFSPTMRFDPLLIENLSVRSECEKSSACSYRGLETTMKLTWKNKGNSKKRSLAAVSSRSNLPFEVPIEVEEHDRANRQDKELNLEAVDRREDGASDRSFSDLKRLAESFQAQGDTLAEVHGGKFREALGKWETAITLMPENAVLHEQKAQVLLEVGEAWGALKAATRATDLDPSWAEVQLTLILSVQYPYLCNAFYSTFKIVSFFRLPWVLSQAWITLGRAQLNFGEPDSAIESFDRALAIKPDSGDARDDRQTAMHLIKRRKQLHSAGLSSSKNRYLVGEKLNNADGS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18341956 18345970 - ClCG08G006070.2 Cla08g00630 278285

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00630 293 PANTHER OSMOSIS RESPONSIVE FACTOR 217 288 - -
Cla08g00630 293 PANTHER OSMOSIS RESPONSIVE FACTOR 41 186 - -
Cla08g00630 293 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Cla08g00630 293 SUPERFAMILY TPR-like 124 267 IPR011990 GO:0005515
Cla08g00630 293 SMART tpr_5 146 179 IPR019734 GO:0005515
Cla08g00630 293 SMART tpr_5 110 145 IPR019734 GO:0005515
Cla08g00630 293 SMART tpr_5 216 249 IPR019734 GO:0005515
Cla08g00630 293 Gene3D Tetratricopeptide repeat domain 101 282 IPR011990 GO:0005515
Cla08g00630 293 ProSiteProfiles TPR repeat region circular profile. 216 248 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00630 - - - csv:101203269 354.369
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g201 . Blo12g01116 . . . . . . . Cmo15g00656 . . . . Sed03g0441 . . Bhi04g01857 Tan11g1227 Cmetu03g1243 . Hepe02g2733 . Lcy10g1268 Cla08g00630 Cam08g1048 Cec08g0634 Cco08g0746 Clacu08g0755 . Cre08g0564 . . Cone17ag0811 . . . . Cme03g00478 . . . . . . . . . . . . . . Car15g00592 . . . . . . . . . . . . . . . . Lsi08g00475 . Chy03g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011996 0 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00630 Cla_Chr08 FPKM 5.87662 5.408082 23.121487 25.166508 61.795704 62.529915 60.676617 9.509245 8.116303 7.947628