Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00640 ATGGATTCAAATAGCTCTCAATTAGAGTCCCGAGAGCAAGCACCCAATCAACAACTTCCTTTTCTCCACACTTCCCAATCAACCCATAAAACCCTCTTCATACCTTCAAAATTCATTTGGCCAAAAGGGGATTTAGTAGAAGCTTATGAAAAGCTGAGTGAACCACATGTCGACCTTGAGGGCTTCCTCAAGGGCGATAAAAAGGCAACCATTGAAGCCTCCAAGATCGTAAGGAAAGCCTGCTTGGAACATGGCTTCTTCCAAGTTACGAACCATGGTGTCGATCAAAATCTGTTAGCCACTGCCCTTGATAAAATGGGCCCTCTTTTTAACCTTCCTTTGAGTCTTAAGACTACGGCTTCCCAAGCCCGGGCTGCCAAAATGTGGGGCTTTTCCACTGCTCATTCTAATCGCTTTTCCTCAAAGCTGCCATGGAAGGAAACTTTCTCCTTTGAGTTTCACCATTCTTGCAATAGCTCCAATAATGAACCACCTGTTGTTCATTTCTTCTCTTCCACTTTAGGCAAGGAATTTGAAGAAATAGGTAGGGTTGTATATGAGAAGTACTGCGAAGCAATGAGGGAGCTATCACTAGCATTAACGGAGGTTTTGGGGATAAGTTTGGGAGTGGAGAGATCATATTTCCGCAAGTTTTTCGAAGATGGAAGCTCCATAATGCGATTGAACAGCTACCCAATTTGCGAACAAGGCGGCGTAGCCCTTGGCACTGGCCCTCACTGTGATCCAACAGCCTTGACTATCCTCCACCAGGATCAAGTCGGTGGCCTCGAAGTCTTCGCTAACAACAAATGGCATACTGTTCCTCCCTCTCCAAATTCACTCGTTGTTAACATTGGTGATGTTTTCATGGCGCTGTGTAATGGAGAATACAAAAGCTGCGTGCATAGGGCGGTGGTGAACAAGCACAAGGAGAGGAGGTCATTGGCATTTTTCCTTTGTCCGAGGAAAGACAAGGTGGTGAGGCCGCCGGAGAAACTTGTTGCCGGCGACGGGTCAAGAAAGTATCCGGATTTTTCCTGGTCGGAGCTGTTTGAATTCACACAAAAGCACTACAGAGCTGATGCTGTAACTCTTCAAAACTTCAGCAAATGGGTGGTGTCAGCGAGGCCATGTGGTGTTTAA 1143 46.19 MDSNSSQLESREQAPNQQLPFLHTSQSTHKTLFIPSKFIWPKGDLVEAYEKLSEPHVDLEGFLKGDKKATIEASKIVRKACLEHGFFQVTNHGVDQNLLATALDKMGPLFNLPLSLKTTASQARAAKMWGFSTAHSNRFSSKLPWKETFSFEFHHSCNSSNNEPPVVHFFSSTLGKEFEEIGRVVYEKYCEAMRELSLALTEVLGISLGVERSYFRKFFEDGSSIMRLNSYPICEQGGVALGTGPHCDPTALTILHQDQVGGLEVFANNKWHTVPPSPNSLVVNIGDVFMALCNGEYKSCVHRAVVNKHKERRSLAFFLCPRKDKVVRPPEKLVAGDGSRKYPDFSWSELFEFTQKHYRADAVTLQNFSKWVVSARPCGV 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18515540 18518870 - ClCG08G006170.1 Cla08g00640 278295

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00640 380 PRINTS Isopenicillin N synthase signature 246 267 - -
Cla08g00640 380 PRINTS Isopenicillin N synthase signature 309 327 - -
Cla08g00640 380 PRINTS Isopenicillin N synthase signature 77 94 - -
Cla08g00640 380 PANTHER GIBBERELLIN 20 OXIDASE 5 31 374 - -
Cla08g00640 380 Gene3D - 22 353 IPR027443 -
Cla08g00640 380 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 222 321 IPR005123 -
Cla08g00640 380 Pfam non-haem dioxygenase in morphine synthesis N-terminal 55 156 IPR026992 -
Cla08g00640 380 MobiDBLite consensus disorder prediction 1 21 - -
Cla08g00640 380 Pfam 2OG-Fe(II) oxygenase superfamily 224 321 IPR044861 -
Cla08g00640 380 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 31 374 - -
Cla08g00640 380 SUPERFAMILY Clavaminate synthase-like 33 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00640 K05282 GA20ox; gibberellin-44 dioxygenase [EC:1.14.11.12] - csv:101209625 682.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01490 Cla-Chr1:29433278 Cla08g00640 Cla-Chr8:18515540 1.88E-145 dispersed
Cla05g00831 Cla-Chr5:8181989 Cla08g00640 Cla-Chr8:18515540 3.63E-112 dispersed
Cla06g00017 Cla-Chr6:219848 Cla08g00640 Cla-Chr8:18515540 4.69E-111 dispersed
Cla08g00640 Cla-Chr8:18515540 Cla10g02094 Cla-Chr10:36638653 1.62E-44 dispersed
Cla08g00640 Cla-Chr8:18515540 Cla01g00518 Cla-Chr1:5621380 4.78E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g197 . . . . . Bpe04g00544 . . . . . . . . Sed01g0939 . . Bhi04g01851 Tan11g1219 Cmetu03g0027 . Hepe02g2737 . . Cla08g00640 Cam08g1059 Cec08g0644 Cco08g0755 Clacu08g0766 . Cre08g0572 . . . . . . . Cme03g00462 . . . . . . . . . . . . . . Car15g00590 . . . . . . . . . . . . . . . . Lsi08g00487 . Chy03g00549 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014001 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla08g00640 Cla_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0