Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla08g00641 ATGAAGTCCTTAAATCCATCAAACAGCAACTTCAATTCCATTCCATCTCCAACCCCATTAGAAACTTTCATCCAAGACATGGGGCGTTCAATGGAGACGCTTATTCTACTCACCGTGGTGAAAATAGCCATCATATCAAGCGTTTTTGTCATGGCGGCGACAGCGGCGGTAGCTTCTCAAGCCTTACCCGAGTGCGATGAATGGTGTGGTGACGTGCAAATTCCATATCCATTCGGGACGAGGGAAGGGTGTTATCTGAATGAAACATTCTTCATTGAGTGTAACACAACTCATTACGATTCTCCAAAGGCATTTCTAACGGGCGGCAACGTTAATGTTACAAATATATCAATCTCGGGGGAGCTCCAAATCTTGAACTTAATGGCCCAAGATTGCTACCCGCCAAAAATTGGTGCTGATGTTTTTTCCTCCATCTTTCTCCATATACCTGGGTACACTATTTCCAGTACTAAAAACAAGTTCATTGCTATCGGCTGCGATACTCTCGGTTTTATTTCCGGCCAAAGCAAAGAAGACCAGTCCTTCACAACTGCATGTGTGGCATTGTGTGATGACATTAGCTCGGTTAAAGATGGGGCATGCTCTGGCAATGGGTGTTGTCAGTTGGAGATTCCCAGTGGCCTTAATTATTTGGAAATTCAGGTTAGCAGCTTAAGCAATCACACTAATGTGTCGAGTTTCAATCCTTGTGGTTATGCGTTTGTAATTGAACAACACAACTTCAACTTCTCCTCCAACTATATACGCAATTTTCCTCAAAACAGAATTTCGGCAGTGCTTGATTGGGCCATTACTAACACTACATGCGTAACGGCTAAGAACAAAACTAATTGTATATGTGGCCCAAATAGCACAAAGGTTGACTTGCTCGATGATAAATCTCAATATCTTTGCCGGTGCTTGGAAGGCTTTGAGGGGAATCCATATCTTCCTCAAGGTTGTCAAGATATAGATGAGTGCAAGGATGAAAGTCTTAATGAGTGCAAGTATGAGTGTGTTAATACAATAGGAAACTATACTTGCAATTGTCCAAAGGACTTTAAAGGAGATGGAAGACGTGGAGGAGAAGGTTGCACCCGAAACGCCAAGTCTTTTGTTCAAATCATTGTCGGAGTTACTGTGGGATTCACAGGTTTAGTAATTGGGAGTACATGGTTATACTTGGGTTACAGAAAGTGGAAGTTCATTAAACTGAAGGAGAAATTTTTTGAGAACAATGGTGGTTTGATGCTTCAAAAGCATCTTTCTCAATGGCAATCATCCACTGACATGGTTAGAATTTTCACTCAAGAGGAGCTGGACAAGGCTACAAACAAGTACAACGAAAGTGCAGTGGTTGGAAAAGGTGGCTACGGTACTGTTTACAAAGGAGTTTTAGACGACGGTTCGGTAGTTGCAATCAAGAAATCAAAATTGGTGGACCAATCCCAAACATCTCAATTCATTAACGAAGTCATTGTTCTGTCCCAAATCAACCACCGTAACGTGGTCAAGCTCTTAGGATGTTGTTTGGAGACACAAGTTCCATTGTTGGTGTACGAGTTCATCACCAATGGCACACTTTACGACCACGTCCATGGAAAAGCCAACCAAGATTCTCTTCCATGGGAAGCTCGTTTGAGAATAGCTTCAGAAACTGCAGGGGTGATTGCATATTTGCATTCTTCAGCTTCCACTCCCATTATTCATAGGGATATCAAGACAACCAACATACTTTTAGACCATAATTGTACTGCAAAGGTCTCTGATTTTGGTGCTTCCAAGTTGGTTCCCATAGATCAATCTCAGTTATCCACGATGGTGCTAGGAACTCTTGGATATTTAGACCCTGAATACTTGTTAACCAGCGAGTTGACAGAGAAGAGCGATGTGTATAGCTTTGGAATAGTGCTTCTAGAGCTTATAACAGGGAAGAAGGCAGTGAGTTTCGAGGGGCCAGAAGCGGAGAGGAACCTAGCCATGTATGTCCTATGTGCAATGAAGGAAGATCGTGTGGTAGAAGTTGTGGAAAAGGGAATGGCGACGGAAGCCAACATTGGGCAGATAAAAGAAGCGGCAAAGTTAGCAACAAAGTGTTTGAGAATAAGGGGGGAGGAACGGCCTAGCATGAAGGAGGTGGCCATGGAGTTGGAGGGGCTGAGAGTGTTGATTCAGGCTAATGAGAAATTAGAGAGCACAAGAGAGGAGATGATGGGTTATTTGGTGCAATCAGATGGAGGTTCAGAATCATCATCCAACCAACTTACTGCGAGTGGGAGCACAAATGCTGTGGATGATAGTATGAAGGTTCACATTTTGCCATTGATCCATAATGGAAGATGA 2343 42.98 MKSLNPSNSNFNSIPSPTPLETFIQDMGRSMETLILLTVVKIAIISSVFVMAATAAVASQALPECDEWCGDVQIPYPFGTREGCYLNETFFIECNTTHYDSPKAFLTGGNVNVTNISISGELQILNLMAQDCYPPKIGADVFSSIFLHIPGYTISSTKNKFIAIGCDTLGFISGQSKEDQSFTTACVALCDDISSVKDGACSGNGCCQLEIPSGLNYLEIQVSSLSNHTNVSSFNPCGYAFVIEQHNFNFSSNYIRNFPQNRISAVLDWAITNTTCVTAKNKTNCICGPNSTKVDLLDDKSQYLCRCLEGFEGNPYLPQGCQDIDECKDESLNECKYECVNTIGNYTCNCPKDFKGDGRRGGEGCTRNAKSFVQIIVGVTVGFTGLVIGSTWLYLGYRKWKFIKLKEKFFENNGGLMLQKHLSQWQSSTDMVRIFTQEELDKATNKYNESAVVGKGGYGTVYKGVLDDGSVVAIKKSKLVDQSQTSQFINEVIVLSQINHRNVVKLLGCCLETQVPLLVYEFITNGTLYDHVHGKANQDSLPWEARLRIASETAGVIAYLHSSASTPIIHRDIKTTNILLDHNCTAKVSDFGASKLVPIDQSQLSTMVLGTLGYLDPEYLLTSELTEKSDVYSFGIVLLELITGKKAVSFEGPEAERNLAMYVLCAMKEDRVVEVVEKGMATEANIGQIKEAAKLATKCLRIRGEERPSMKEVAMELEGLRVLIQANEKLESTREEMMGYLVQSDGGSESSSNQLTASGSTNAVDDSMKVHILPLIHNGR 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 18530570 18536046 + ClCG08G006180.2 Cla08g00641 278296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla08g00641 780 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 41 725 - -
Cla08g00641 780 CDD STKc_IRAK 453 720 - -
Cla08g00641 780 ProSitePatterns Protein kinases ATP-binding region signature. 453 476 IPR017441 GO:0005524
Cla08g00641 780 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 41 725 IPR045274 GO:0007166
Cla08g00641 780 Gene3D Phosphorylase Kinase; domain 1 418 522 - -
Cla08g00641 780 ProSiteProfiles EGF-like domain profile. 323 357 IPR000742 -
Cla08g00641 780 SUPERFAMILY Protein kinase-like (PK-like) 425 718 IPR011009 -
Cla08g00641 780 Gene3D Transferase(Phosphotransferase) domain 1 523 741 - -
Cla08g00641 780 SMART egfca_6 323 366 IPR001881 GO:0005509
Cla08g00641 780 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 339 350 IPR000152 -
Cla08g00641 780 SMART serkin_6 447 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00641 780 Gene3D Plasmodium vivax P25 domain 262 371 - -
Cla08g00641 780 ProSitePatterns Calcium-binding EGF-like domain signature. 323 348 IPR018097 GO:0005509
Cla08g00641 780 Pfam Protein kinase domain 447 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00641 780 SMART egf_5 326 366 IPR000742 -
Cla08g00641 780 SMART egf_5 275 322 IPR000742 -
Cla08g00641 780 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
Cla08g00641 780 ProSiteProfiles Protein kinase domain profile. 447 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla08g00641 780 CDD EGF_CA 323 357 - -
Cla08g00641 780 SUPERFAMILY EGF/Laminin 322 358 - -
Cla08g00641 780 Pfam Wall-associated receptor kinase galacturonan-binding 65 120 IPR025287 GO:0030247
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00641 Cla-Chr8:18530570 Cla08g00643 Cla-Chr8:18583193 0 dispersed
Cla11g00719 Cla-Chr11:9982346 Cla08g00641 Cla-Chr8:18530570 1.97E-53 dispersed
Cla08g00639 Cla-Chr8:18489931 Cla08g00641 Cla-Chr8:18530570 0 proximal
Cla08g00641 Cla-Chr8:18530570 Cla08g00642 Cla-Chr8:18552832 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80729 PF00069 Pkinase 4.50E-48 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla08g00641 - - csv:101209870 1169.07